Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30329.Seq
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   107   1e-24
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   107   1e-24
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    31   0.11 
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    29   0.61 
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    25   5.7  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   7.5  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   7.5  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  107 bits (257), Expect = 1e-24
 Identities = 48/84 (57%), Positives = 65/84 (77%)
 Frame = +1

Query: 16  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 195
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 196 XIRVTVKGGGHVAQVYAIRQLFQR 267
            IRV V GGGHV+Q+YAIRQ   +
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISK 84



 Score = 79.4 bits (187), Expect = 3e-16
 Identities = 35/48 (72%), Positives = 42/48 (87%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGG 398
           AISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR EPKKFGG
Sbjct: 81  AISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGG 128


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  107 bits (257), Expect = 1e-24
 Identities = 48/84 (57%), Positives = 65/84 (77%)
 Frame = +1

Query: 16  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 195
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 196 XIRVTVKGGGHVAQVYAIRQLFQR 267
            IRV V GGGHV+Q+YAIRQ   +
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISK 84



 Score = 79.4 bits (187), Expect = 3e-16
 Identities = 35/48 (72%), Positives = 42/48 (87%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGG 398
           AISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR EPKKFGG
Sbjct: 81  AISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGG 128


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = +1

Query: 37  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVXIRVTVK 216
           G++K++ A      G G   VNG P D+   R++  K      L    + +   +  TV 
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70

Query: 217 GGGHVAQVYAI 249
           GGG   Q  A+
Sbjct: 71  GGGPTGQSGAV 81


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 218 VVVM*HKFTLSDSYFKGSDRLLPEICR 298
           V+V   KF   D+Y KG+  ++P IC+
Sbjct: 766 VIVKHGKFKKMDAYVKGAPEIMPSICK 792


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 17/58 (29%), Positives = 22/58 (37%)
 Frame = +2

Query: 119 WLSPDCCSTNFRNLSFCSARKNSLWLXSE*QSRVVVM*HKFTLSDSYFKGSDRLLPEI 292
           W S D  S N    S  S  K S W   E +  +        +  S  K  +RLLP +
Sbjct: 342 WSSSDMASLNDSLYSHPSVSKQSTWTEEELKEELESFGELVPVPFSSTKAFERLLPHL 399


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 255 LSDSVNLCYMTTTLDCHSDXNH-REFFLAEQ 166
           LS+  N CYM + L C +     R+FF +++
Sbjct: 313 LSNLGNTCYMNSALQCLTHTRELRDFFTSDE 343


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 103  RLHAAFHDHACNTQLRWRFS 44
            RLH+ F++H C + L+  FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,116,894
Number of Sequences: 5004
Number of extensions: 38658
Number of successful extensions: 103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)