Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30329.Seq
(558 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical pr... 126 1e-29
Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical pr... 31 0.56
AF410936-1|AAL05561.1| 348|Caenorhabditis elegans ephrin EFN-4 ... 30 1.3
AF038619-2|AAB92075.2| 348|Caenorhabditis elegans Eph(f)rin pro... 30 1.3
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 28 4.0
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 28 4.0
Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical pr... 27 6.9
AC006769-14|AAF60579.1| 378|Caenorhabditis elegans Hypothetical... 27 6.9
Z36282-1|CAD45602.1| 424|Caenorhabditis elegans Hypothetical pr... 27 9.1
AF455271-1|AAL65193.1| 424|Caenorhabditis elegans C21ORF80 prot... 27 9.1
>Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical
protein T01C3.6 protein.
Length = 144
Score = 126 bits (303), Expect = 1e-29
Identities = 53/80 (66%), Positives = 71/80 (88%)
Frame = +1
Query: 16 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 195
+Q+VQ FGRKKTATAVA+CK+G G+++VNGRPL+ +EP++L+ KLQEP+LL+GKE+F V
Sbjct: 5 VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64
Query: 196 XIRVTVKGGGHVAQVYAIRQ 255
IR+ V GGGHVAQ+YA+RQ
Sbjct: 65 DIRIRVSGGGHVAQIYAVRQ 84
Score = 75.4 bits (177), Expect = 3e-14
Identities = 33/48 (68%), Positives = 41/48 (85%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGG 398
A++KAL+A+Y KYVDE SK+E+K+I YD+SLLVADPRR E KKFGG
Sbjct: 85 ALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRESKKFGG 132
>Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical
protein BE10.4 protein.
Length = 301
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 291 YVDEASKKEIKDILVQYDRSLLVADPRRCE 380
+ DE +KE+ D+ QYDRS+ + D R E
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSIEIIDKVRHE 180
>AF410936-1|AAL05561.1| 348|Caenorhabditis elegans ephrin EFN-4
protein.
Length = 348
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -1
Query: 231 YMTTTLDCHSDXNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIRNCGG 52
YMTT+ + NHR + L E ++ L + S + + AP Q T A G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207
Query: 51 G 49
G
Sbjct: 208 G 208
>AF038619-2|AAB92075.2| 348|Caenorhabditis elegans Eph(f)rin
protein 4 protein.
Length = 348
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -1
Query: 231 YMTTTLDCHSDXNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIRNCGG 52
YMTT+ + NHR + L E ++ L + S + + AP Q T A G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207
Query: 51 G 49
G
Sbjct: 208 G 208
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -1
Query: 225 TTTLDCHSDXNHREFFLAEQKD-RF--LKFVLQQSG 127
TT LDC + H EF+ AE D RF + F+ +Q G
Sbjct: 146 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 181
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -1
Query: 225 TTTLDCHSDXNHREFFLAEQKD-RF--LKFVLQQSG 127
TT LDC + H EF+ AE D RF + F+ +Q G
Sbjct: 21 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 56
>Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical protein
F16D3.4 protein.
Length = 1232
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +1
Query: 88 MLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVXIRVTVKGGG 225
++ + P+D + R + ++L+ P+L LG E + + + + V GG
Sbjct: 1004 LMNIYSEPMDFISDRTV-FQLK-PLLDLGSEYYEQLILGIVVSAGG 1047
>AC006769-14|AAF60579.1| 378|Caenorhabditis elegans Hypothetical
protein Y45G12C.1 protein.
Length = 378
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 113 WTWLSPDCCSTNFRNLSFCSARKNSLWLXSE*QSRVVVM*HKFTLSDSY 259
WT S D C N +N + R N WL + ++V + H+ +L D Y
Sbjct: 74 WTGKSYDFCYRNPKNATLVGKRFNCTWLSTLEDLKLVGL-HEQSLVDLY 121
>Z36282-1|CAD45602.1| 424|Caenorhabditis elegans Hypothetical
protein K10G9.3 protein.
Length = 424
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 219 WWSCSTSLRYQTAISKALIAFYQKYVDEASKKE 317
+W S+RY + AF +KY+D K++
Sbjct: 230 YWKARRSMRYSNDLVDVADAFRKKYLDSDDKRD 262
>AF455271-1|AAL65193.1| 424|Caenorhabditis elegans C21ORF80
protein.
Length = 424
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 219 WWSCSTSLRYQTAISKALIAFYQKYVDEASKKE 317
+W S+RY + AF +KY+D K++
Sbjct: 230 YWKARRSMRYSNDLVDVADAFRKKYLDSDDKRD 262
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,015,255
Number of Sequences: 27780
Number of extensions: 227110
Number of successful extensions: 488
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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