Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30328.Seq
(878 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 122 5e-28
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 117 1e-26
08_02_0657 - 19749835-19751942,19753123-19753561 94 2e-19
09_06_0271 + 21959213-21960559 33 0.40
06_03_0668 + 23301578-23301791,23302102-23302199,23302233-233023... 33 0.40
02_01_0789 - 5919271-5919411,5920105-5920215,5920303-5920401,592... 33 0.40
01_01_0886 - 6970112-6970225,6970357-6970473,6970567-6970635,697... 31 0.92
07_03_1770 - 29382508-29382591,29382901-29383041,29383134-293835... 30 2.1
05_07_0274 - 28873531-28873644,28873727-28873981,28874111-288741... 30 2.1
04_04_0124 + 22929700-22929761,22930192-22930310,22930459-229305... 30 2.1
03_02_0691 + 10432615-10433109,10433155-10433216,10433526-104335... 30 2.8
06_01_0057 - 483710-484309 29 4.9
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 28 8.6
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 28 8.6
02_05_0752 + 31491462-31491921,31492177-31492271,31492346-314925... 28 8.6
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 122 bits (293), Expect = 5e-28
Identities = 74/191 (38%), Positives = 104/191 (54%), Gaps = 2/191 (1%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CIVL+DD C + KIRM DVVS+ CP VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHIL 124
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
PIDD+VEG+TGNLF+ +LKPYF+EAYRP+ + D F G S K I A +
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRGG---MRSVEFKVIETDPAEYC 181
Query: 583 LI-P*YTVTVNRLNVRKKRKH*MLSAMMTS-GGCRKQLGANLRRWWSCHCVILHWFKAIG 756
++ P + + ++++ + + GG RKQ+ A +R FK+IG
Sbjct: 182 IVAPDTEIFCDGEPIKREDEERLDEVGYDDVGGVRKQM-AQIRELVELPLRHPQLFKSIG 240
Query: 757 SEPPTRAFLMY 789
+PP + L+Y
Sbjct: 241 VKPP-KGILLY 250
Score = 111 bits (267), Expect = 7e-25
Identities = 62/125 (49%), Positives = 79/125 (63%), Gaps = 3/125 (2%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGRLSQTT 689
VRGGMR+VEFKV+ETDP+ +CIVAPDT I CDGEPIKRE+EE L+ VGYDD+G + +
Sbjct: 161 VRGGMRSVEFKVIETDPAEYCIVAPDTEIFCDGEPIKREDEER-LDEVGYDDVGGVRKQM 219
Query: 690 GRKFKEMVELPLRHPSLVQGYWE*TSHAGISHVXGRLV---PGKNTPLLVAXCQXKQGAS 860
+ +E+VELPLRHP L + G+ G L+ PG L+ + GA
Sbjct: 220 A-QIRELVELPLRHPQLFKS-------IGVKPPKGILLYGPPGSGKTLIARAVANETGAF 271
Query: 861 SF*IN 875
F IN
Sbjct: 272 FFLIN 276
Score = 89.4 bits (212), Expect = 3e-18
Identities = 41/65 (63%), Positives = 51/65 (78%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
+D K D STAIL RK PNRL+V+EA +DDNSV+ + ME+LQLFRGDTVLLKGK+
Sbjct: 11 SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLKGKK 70
Query: 242 RKETV 256
RK+T+
Sbjct: 71 RKDTI 75
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 117 bits (281), Expect = 1e-26
Identities = 69/190 (36%), Positives = 101/190 (53%), Gaps = 1/190 (0%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CIVL+D+ C + KIRM DVVS+ C VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHIL 124
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
PIDD+VEG+TGNLF+ +LKPYF+EAYRP+ + D F G K + + +
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPTEYC--I 182
Query: 583 LIP*YTVTVNRLNVRKKRKH*MLSAMMTS-GGCRKQLGANLRRWWSCHCVILHWFKAIGS 759
+ P + + ++++ + + GG RKQ+ A +R FK+IG
Sbjct: 183 VAPDTEIFCDGEPIKREDEERLDEVGYDDVGGVRKQM-AQIRELVELPLRHPQLFKSIGV 241
Query: 760 EPPTRAFLMY 789
+PP + L+Y
Sbjct: 242 KPP-KGILLY 250
Score = 111 bits (267), Expect = 7e-25
Identities = 62/125 (49%), Positives = 79/125 (63%), Gaps = 3/125 (2%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGRLSQTT 689
VRGGMR+VEFKV+ETDP+ +CIVAPDT I CDGEPIKRE+EE L+ VGYDD+G + +
Sbjct: 161 VRGGMRSVEFKVIETDPTEYCIVAPDTEIFCDGEPIKREDEER-LDEVGYDDVGGVRKQM 219
Query: 690 GRKFKEMVELPLRHPSLVQGYWE*TSHAGISHVXGRLV---PGKNTPLLVAXCQXKQGAS 860
+ +E+VELPLRHP L + G+ G L+ PG L+ + GA
Sbjct: 220 A-QIRELVELPLRHPQLFKS-------IGVKPPKGILLYGPPGSGKTLIARAVANETGAF 271
Query: 861 SF*IN 875
F IN
Sbjct: 272 FFLIN 276
Score = 93.1 bits (221), Expect = 3e-19
Identities = 45/65 (69%), Positives = 52/65 (80%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
AD K D STAIL RK PNRL+V+EA +DDNSVVAL ME+LQLFRGDTVLLKGK+
Sbjct: 11 ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKK 70
Query: 242 RKETV 256
RK+T+
Sbjct: 71 RKDTI 75
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 93.9 bits (223), Expect = 2e-19
Identities = 38/88 (43%), Positives = 56/88 (63%)
Frame = +1
Query: 256 CIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTG 435
C D++CPD ++R+ D+V++ PCP+++ KRV + P DDSVEG++G
Sbjct: 79 CYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPFDDSVEGISG 138
Query: 436 NLFEVYLKPYFMEAYRPIHRDDTFRSAG 519
+LFE YLKPYFM+A RP+ + D F G
Sbjct: 139 DLFEPYLKPYFMDALRPVKKGDRFLVRG 166
Score = 81.4 bits (192), Expect = 9e-16
Identities = 44/81 (54%), Positives = 58/81 (71%), Gaps = 2/81 (2%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPF-CIVAPDTVIHCD-GEPIKREEEEEALNAVGYDDIGRLSQ 683
VRG M AVEFKV++T+P+ IVA DT I CD G+P+KRE+EE L+ GYDD+G + +
Sbjct: 164 VRGHMHAVEFKVMDTEPNNEPVIVAGDTEIFCDEGDPVKREDEER-LDGPGYDDVGGVRK 222
Query: 684 TTGRKFKEMVELPLRHPSLVQ 746
+ +E+VELPLRHP L Q
Sbjct: 223 QLA-QIRELVELPLRHPKLFQ 242
Score = 62.5 bits (145), Expect = 4e-10
Identities = 34/63 (53%), Positives = 45/63 (71%), Gaps = 5/63 (7%)
Frame = +2
Query: 83 DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRK 247
D STAIL +K PNRL+ ++A V+ DNS V LS+A ME+L +FRGD V L+G+RR+
Sbjct: 16 DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75
Query: 248 ETV 256
E V
Sbjct: 76 EAV 78
>09_06_0271 + 21959213-21960559
Length = 448
Score = 32.7 bits (71), Expect = 0.40
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +3
Query: 651 VGYDDIGRLSQTTGRKFKEMVELPLRHPSL 740
V YDDIG + R+ +E VELPL HP L
Sbjct: 187 VAYDDIGGC-EAQKREVREAVELPLTHPEL 215
>06_03_0668 +
23301578-23301791,23302102-23302199,23302233-23302301,
23302674-23302961,23303045-23303208,23303344-23303599,
23303706-23303816,23304109-23304195,23305916-23305985,
23306093-23306149,23306309-23306426,23307314-23307403,
23307492-23307671,23307816-23307893,23308016-23308088
Length = 650
Score = 32.7 bits (71), Expect = 0.40
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 657 YDDIGRLSQTTGRKFKEMVELPLRHPSLVQ 746
YD IG L Q ++ KE++ELP++HP L +
Sbjct: 187 YDMIGGLDQQI-KEIKEVIELPIKHPELFE 215
>02_01_0789 -
5919271-5919411,5920105-5920215,5920303-5920401,
5920486-5920642,5920774-5920937,5921017-5921079,
5921153-5921377,5922038-5922135,5923283-5923499
Length = 424
Score = 32.7 bits (71), Expect = 0.40
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 657 YDDIGRLSQTTGRKFKEMVELPLRHPSLVQ 746
YD IG L Q ++ KE++ELP++HP L +
Sbjct: 165 YDMIGGLDQQI-KEIKEVIELPIKHPELFE 193
>01_01_0886 -
6970112-6970225,6970357-6970473,6970567-6970635,
6970711-6970849,6970964-6971532,6971799-6971966,
6972097-6972184,6972260-6972818,6972924-6973024,
6973113-6973155,6973845-6973938,6974160-6974215,
6974460-6974581,6975306-6975517
Length = 816
Score = 31.5 bits (68), Expect = 0.92
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 651 VGYDDIGRLSQTTGRKFKEMVELPLRHPSLVQG 749
V +DDIG LS +E+V LPLR P L +G
Sbjct: 505 VTFDDIGALSDIK-ESLQELVMLPLRRPDLFKG 536
>07_03_1770 -
29382508-29382591,29382901-29383041,29383134-29383520,
29383685-29383930,29385396-29385437,29385973-29386461
Length = 462
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 567 FCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGRLSQTTGRKFKEMVELPLRHPSLVQ 746
F +++ ++ + +P+ + E Y DIG L ++ KE VELPL HP L +
Sbjct: 176 FQVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLDAQI-QEIKEAVELPLTHPELYE 234
>05_07_0274 -
28873531-28873644,28873727-28873981,28874111-28874179,
28874277-28874415,28874511-28875076,28875225-28875326,
28875425-28875491,28875576-28876072,28876148-28876212,
28876470-28876567,28876652-28876694,28876870-28876963,
28877325-28877360,28877454-28877542,28877667-28877788,
28878193-28878404
Length = 855
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 651 VGYDDIGRLSQTTGRKFKEMVELPLRHPSLVQG 749
V +DDIG L+ +E+V LPLR P L +G
Sbjct: 498 VTFDDIGALADIK-ESLQELVMLPLRRPDLFKG 529
>04_04_0124 +
22929700-22929761,22930192-22930310,22930459-22930541,
22930640-22930738,22930769-22930786,22931044-22931110,
22931244-22931319,22931450-22931516,22932303-22932520,
22933124-22933191,22933743-22933822,22934362-22934448,
22934524-22934631,22934753-22934848,22935045-22935140,
22936826-22937155
Length = 557
Score = 30.3 bits (65), Expect = 2.1
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = +3
Query: 504 LQVRGGMRAVEFKVVETDPSPFC--IVAPDTVIHCDGEPIK-REEEEEALNAVGYDDIGR 674
LQV GG A + +V T F IV D ++ DG+PIK + + L+ G D
Sbjct: 347 LQVPGGSAAAKAGLVPTSRG-FAGNIVLGDVIVAVDGKPIKGKSDLSRVLDDYGVGDKVS 405
Query: 675 LSQTTGRKFKEMV 713
L+ G + EMV
Sbjct: 406 LTIQRGAETLEMV 418
>03_02_0691 +
10432615-10433109,10433155-10433216,10433526-10433565,
10434562-10434807,10435020-10435189,10435323-10435539,
10435615-10435755,10435943-10436026
Length = 484
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 591 VIHCDGEPIKREEEEEALNAVGYDDIGRLSQTTGRKFKEMVELPLRHPSLVQ 746
++ + +P+ + E Y DIG L ++ KE VELPL HP L +
Sbjct: 206 ILQDEVDPMVSVMKVEKAPLESYADIGGLDAQI-QEIKEAVELPLTHPELYE 256
>06_01_0057 - 483710-484309
Length = 199
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 87 YRPRSSVARTDPTVSLSKKQSAMTTQS-WHFHRPKWSNFNSSVVTQSCSR 233
Y P ART P ++ + A S W F WS+ S V+T+ SR
Sbjct: 62 YFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSR 111
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 476 LTVRSIVTTPSGPRGHARRRVQSGRNRSITILHRGS 583
+ + +V T GP+G + +GR RS+T+ + G+
Sbjct: 27 MAISDLVKTTLGPKGMDKILQSTGRGRSVTVTNDGA 62
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 476 LTVRSIVTTPSGPRGHARRRVQSGRNRSITILHRGS 583
+ + +V T GP+G + +GR RS+T+ + G+
Sbjct: 26 MAIADLVKTTLGPKGMDKILQSTGRGRSVTVTNDGA 61
>02_05_0752 +
31491462-31491921,31492177-31492271,31492346-31492573,
31493070-31493157,31493275-31493326,31493985-31494050,
31494382-31494536,31494633-31494703,31494820-31495017,
31495103-31495144,31496223-31496324,31496514-31496603,
31496708-31496783,31497299-31497395,31497488-31497557,
31497676-31497852,31498156-31498239,31498971-31499093,
31500143-31500226,31500318-31500502,31500592-31500730,
31500841-31500900,31500969-31501040,31501136-31501197,
31501839-31501945,31501984-31502058,31502800-31503248
Length = 1168
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 651 VGYDDIGRLSQTTGRKFKEMVELPLRHPSL 740
V +DDIG L R E+V LP+R P L
Sbjct: 653 VKFDDIGALEDVK-RTLDELVTLPMRRPEL 681
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,538,727
Number of Sequences: 37544
Number of extensions: 563211
Number of successful extensions: 1508
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1501
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -