Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30328.Seq
         (878 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                        112   3e-25
SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.057
SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             29   3.7  
SB_33050| Best HMM Match : Pox_A32 (HMM E-Value=0.0022)                29   6.6  
SB_13305| Best HMM Match : Pox_A32 (HMM E-Value=0.0022)                29   6.6  
SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.6  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score =  112 bits (270), Expect = 3e-25
 Identities = 48/54 (88%), Positives = 53/54 (98%)
 Frame = +3

Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIG 671
           VRGGMRAVEFKV+ETDPSP+CIVAPDTVIHC+GEP+KREEEEE+LN VGYDDIG
Sbjct: 108 VRGGMRAVEFKVIETDPSPYCIVAPDTVIHCEGEPVKREEEEESLNEVGYDDIG 161



 Score =  101 bits (241), Expect = 1e-21
 Identities = 46/59 (77%), Positives = 56/59 (94%)
 Frame = +2

Query: 80  DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETV 256
           D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KGK+RK+TV
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKGKKRKDTV 63



 Score = 31.9 bits (69), Expect = 0.70
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVV 351
           L +G+  +   CIVLSDD   D+KIRM             DVV
Sbjct: 53  LIKGKKRKDTVCIVLSDDTISDDKIRMNRVVRMNLRVRLGDVV 95


>SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 802

 Score = 35.5 bits (78), Expect = 0.057
 Identities = 21/54 (38%), Positives = 30/54 (55%)
 Frame = +3

Query: 591 VIHCDGEPIKREEEEEALNAVGYDDIGRLSQTTGRKFKEMVELPLRHPSLVQGY 752
           VIH  G  IK++ E  A   V +  IG L +T  +  +EM+E+PL +P L   Y
Sbjct: 235 VIHPFGSVIKKDSE--AKKGVSFQSIGGL-KTQIQAVREMIEMPLTNPELFTAY 285



 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 651 VGYDDIGRLSQTTGRKFKEMVELPLRHPSLVQ 746
           V + D+G  ++   RK KE VE PL+HP   Q
Sbjct: 534 VHWSDVGG-NEMIKRKLKEAVEWPLKHPEAFQ 564


>SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = +3

Query: 591 VIHCDGEPIKREEEEEALNAVGYDDIGRLSQTTGRKFKEMVELPLRHPSLVQ 746
           V+  D +P+    + E      Y DIG L  T  ++ KE VELPL HP L +
Sbjct: 357 VLSDDADPMVTVMKLEKAPQESYADIGGLD-TQIQEIKESVELPLTHPELYE 407


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 792  PIHEKCPRGRFTPNSLEPVKDDAVATPP 709
            P+ E CP G + P      K+D +A PP
Sbjct: 3015 PMGEPCPIGTYLPTEFGKFKNDCLACPP 3042


>SB_33050| Best HMM Match : Pox_A32 (HMM E-Value=0.0022)
          Length = 560

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 567 FCIVAPDTVIHCDGEPIKREE---EEEALNAVGYDDIGRLSQTTGRKFKEMVELPL 725
           FC+  P T+   +G+P +  E    E    A+ +DD+ R+S    RK+++  E  L
Sbjct: 421 FCLRHPYTIALDEGQPGRLPEGKSREMVGKALTHDDVKRMSAKEVRKYEKRYETAL 476


>SB_13305| Best HMM Match : Pox_A32 (HMM E-Value=0.0022)
          Length = 578

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 567 FCIVAPDTVIHCDGEPIKREE---EEEALNAVGYDDIGRLSQTTGRKFKEMVELPL 725
           FC+  P T+   +G+P +  E    E    A+ +DD+ R+S    RK+++  E  L
Sbjct: 439 FCLRHPYTIALDEGQPGRLPEGKSREMVGKALTHDDVKRMSAKEVRKYEKRYETAL 494


>SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +3

Query: 657 YDDIGRLSQTTGRKFKEMVELPLRHPSLVQ 746
           Y+ +G L +   ++ KE++ELP++HP L +
Sbjct: 176 YEMVGGLDKQI-KEIKEVIELPVKHPELFE 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,748,339
Number of Sequences: 59808
Number of extensions: 624667
Number of successful extensions: 1650
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1650
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)