Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30328.Seq
(878 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 120 2e-27
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 118 7e-27
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 118 7e-27
Z95559-13|CAB09003.2| 682|Caenorhabditis elegans Hypothetical p... 33 0.36
AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome re... 31 1.4
Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical pr... 29 5.8
AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical ... 29 5.8
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 29 5.8
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 29 5.8
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical p... 28 7.7
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical p... 28 7.7
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p... 28 7.7
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 28 7.7
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C... 28 7.7
AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B... 28 7.7
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A... 28 7.7
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein. 28 7.7
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 120 bits (288), Expect = 2e-27
Identities = 67/191 (35%), Positives = 107/191 (56%), Gaps = 2/191 (1%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
+ +G+ + + I++SD++CP+EK+RM DVVSI P P++ YG R+H+L
Sbjct: 64 ILKGKKRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVL 123
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
PIDD++EGLTGNLF+V+LKPYF+EAYRP+H+ D F A K + + +
Sbjct: 124 PIDDTIEGLTGNLFDVFLKPYFLEAYRPLHKGDIFTVQAAMRTVEFKVVET--EPAPACI 181
Query: 583 LIP*YTVTVNRLNVRKKRKH*MLSAMMTS--GGCRKQLGANLRRWWSCHCVILHWFKAIG 756
+ P + ++++ + ++ + GG RKQL A ++ FKAIG
Sbjct: 182 VSPDTMIHYEGDPIKREEEEESMNDIGYDDLGGVRKQL-AQIKEMVELPLRHPQLFKAIG 240
Query: 757 SEPPTRAFLMY 789
+PP R L++
Sbjct: 241 IKPP-RGILLF 250
Score = 110 bits (264), Expect = 1e-24
Identities = 49/77 (63%), Positives = 63/77 (81%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGRLSQTT 689
V+ MR VEFKVVET+P+P CIV+PDT+IH +G+PIKREEEEE++N +GYDD+G + +
Sbjct: 160 VQAAMRTVEFKVVETEPAPACIVSPDTMIHYEGDPIKREEEEESMNDIGYDDLGGVRKQL 219
Query: 690 GRKFKEMVELPLRHPSL 740
+ KEMVELPLRHP L
Sbjct: 220 A-QIKEMVELPLRHPQL 235
Score = 90.6 bits (215), Expect = 1e-18
Identities = 42/63 (66%), Positives = 55/63 (87%)
Frame = +2
Query: 71 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
K D+LSTAIL+ K +PNRLIV+++ DDNSV+A+SQAKM++L LFRGD V+LKGK+RKE
Sbjct: 13 KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKE 72
Query: 251 TVA 259
+VA
Sbjct: 73 SVA 75
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 118 bits (283), Expect = 7e-27
Identities = 66/125 (52%), Positives = 79/125 (63%), Gaps = 3/125 (2%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGRLSQTT 689
V+ MR VEFKVVETDP+P CIVAPDTVIH +G+PIKREEEEEALN VGYDD+G + +
Sbjct: 159 VQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALNEVGYDDLGGVRKQL 218
Query: 690 GRKFKEMVELPLRHPSLVQGYWE*TSHAGISHVXGRLV---PGKNTPLLVAXCQXKQGAS 860
+ KEMVELPLRHP L + G+ G L+ PG L+ + GA
Sbjct: 219 A-QIKEMVELPLRHPQLFKA-------IGVKPPRGILLFGPPGTGKTLIARAVANETGAF 270
Query: 861 SF*IN 875
F IN
Sbjct: 271 FFLIN 275
Score = 109 bits (261), Expect = 3e-24
Identities = 67/191 (35%), Positives = 104/191 (54%), Gaps = 2/191 (1%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
+ +G+ + IVL+ DNCP++KI+M DVVSI+ ++YGKRVH+L
Sbjct: 64 ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
PIDD++EGLTGNLF+V+L+PYF +AYRP+H+ D F A K + + +
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVET--DPAPACI 180
Query: 583 LIP*YTVTVNRLNVRKKRKH*MLSAMMTS--GGCRKQLGANLRRWWSCHCVILHWFKAIG 756
+ P + ++++ + L+ + GG RKQL A ++ FKAIG
Sbjct: 181 VAPDTVIHYEGDPIKREEEEEALNEVGYDDLGGVRKQL-AQIKEMVELPLRHPQLFKAIG 239
Query: 757 SEPPTRAFLMY 789
+PP R L++
Sbjct: 240 VKPP-RGILLF 249
Score = 89.0 bits (211), Expect = 4e-18
Identities = 40/63 (63%), Positives = 56/63 (88%)
Frame = +2
Query: 71 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
K D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13 KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72
Query: 251 TVA 259
TV+
Sbjct: 73 TVS 75
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 118 bits (283), Expect = 7e-27
Identities = 66/125 (52%), Positives = 79/125 (63%), Gaps = 3/125 (2%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGRLSQTT 689
V+ MR VEFKVVETDP+P CIVAPDTVIH +G+PIKREEEEEALN VGYDD+G + +
Sbjct: 159 VQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALNEVGYDDLGGVRKQL 218
Query: 690 GRKFKEMVELPLRHPSLVQGYWE*TSHAGISHVXGRLV---PGKNTPLLVAXCQXKQGAS 860
+ KEMVELPLRHP L + G+ G L+ PG L+ + GA
Sbjct: 219 A-QIKEMVELPLRHPQLFKA-------IGVKPPRGILLFGPPGTGKTLIARAVANETGAF 270
Query: 861 SF*IN 875
F IN
Sbjct: 271 FFLIN 275
Score = 109 bits (261), Expect = 3e-24
Identities = 67/191 (35%), Positives = 104/191 (54%), Gaps = 2/191 (1%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
+ +G+ + IVL+ DNCP++KI+M DVVSI+ ++YGKRVH+L
Sbjct: 64 ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
PIDD++EGLTGNLF+V+L+PYF +AYRP+H+ D F A K + + +
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVET--DPAPACI 180
Query: 583 LIP*YTVTVNRLNVRKKRKH*MLSAMMTS--GGCRKQLGANLRRWWSCHCVILHWFKAIG 756
+ P + ++++ + L+ + GG RKQL A ++ FKAIG
Sbjct: 181 VAPDTVIHYEGDPIKREEEEEALNEVGYDDLGGVRKQL-AQIKEMVELPLRHPQLFKAIG 239
Query: 757 SEPPTRAFLMY 789
+PP R L++
Sbjct: 240 VKPP-RGILLF 249
Score = 89.0 bits (211), Expect = 4e-18
Identities = 40/63 (63%), Positives = 56/63 (88%)
Frame = +2
Query: 71 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
K D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13 KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72
Query: 251 TVA 259
TV+
Sbjct: 73 TVS 75
>Z95559-13|CAB09003.2| 682|Caenorhabditis elegans Hypothetical
protein Y41E3.1a protein.
Length = 682
Score = 32.7 bits (71), Expect = 0.36
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +3
Query: 651 VGYDDIGRLSQTTGRKFKEMVELPLR 728
+GYDD+ RL Q+ +++E+ E+P++
Sbjct: 30 IGYDDVSRLEQSRAERYQEIDEIPVK 55
>AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 2 protein.
Length = 443
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +3
Query: 591 VIHCDGEPIKREEEEEALNAVGYDDIGRLSQTTGRKFKEMVELPLRHP 734
V+ D +P+ + E Y D+G L Q ++ KE VELPL HP
Sbjct: 165 VLSDDTDPMVSVMKLEKAPQETYADVGGLDQQI-QEIKEAVELPLTHP 211
>Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical
protein ZK20.3 protein.
Length = 372
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 552 TDPSPFCIVAPDTVIHCDGEPIKREEEEE--ALNAVGYD 662
++P+P VAP+ + E + E+EE A+ +GYD
Sbjct: 153 SNPAPAADVAPEAAAPAEAEALTDEQEENVLAITGMGYD 191
>AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical
protein Y39F10A.3 protein.
Length = 309
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 85 IIRAFIICHFIQNLLLESKNYYNFY 11
++ AF++C + N+LL SK+ Y FY
Sbjct: 8 LLLAFVVCLTLFNVLLWSKSNYGFY 32
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 657 YDDIGRLSQTTGRKFKEMVELPLRHPSL 740
Y+ +G L T ++ KE++ELP++HP L
Sbjct: 153 YEMVGGLD-TQIKEIKEVIELPVKHPEL 179
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 657 YDDIGRLSQTTGRKFKEMVELPLRHPSL 740
Y+ +G L T ++ KE++ELP++HP L
Sbjct: 174 YEMVGGLD-TQIKEIKEVIELPVKHPEL 200
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 657 YDDIGRLSQTTGRKFKEMVELPLRHPSL 740
Y+ +G L + ++ KE++ELP++HP L
Sbjct: 158 YEMVGGLDKQI-KEIKEVIELPVKHPEL 184
>Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical
protein T14G10.2b protein.
Length = 1311
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 852 PVXIGXQPRAMECFFPVQGGPIHEKCPRGRFTPNSLEPVKDDAVATPPSP 703
P G PR G P+H+K PR + PN + D++A PP P
Sbjct: 133 PQSNGMSPRTPPRGIHHSGEPVHQKTPR-KSAPN----MSVDSIAMPPPP 177
>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 852 PVXIGXQPRAMECFFPVQGGPIHEKCPRGRFTPNSLEPVKDDAVATPPSP 703
P G PR G P+H+K PR + PN + D++A PP P
Sbjct: 133 PQSNGMSPRTPPRGIHHSGEPVHQKTPR-KSAPN----MSVDSIAMPPPP 177
>Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical
protein T14G10.2b protein.
Length = 1311
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 852 PVXIGXQPRAMECFFPVQGGPIHEKCPRGRFTPNSLEPVKDDAVATPPSP 703
P G PR G P+H+K PR + PN + D++A PP P
Sbjct: 133 PQSNGMSPRTPPRGIHHSGEPVHQKTPR-KSAPN----MSVDSIAMPPPP 177
>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 852 PVXIGXQPRAMECFFPVQGGPIHEKCPRGRFTPNSLEPVKDDAVATPPSP 703
P G PR G P+H+K PR + PN + D++A PP P
Sbjct: 133 PQSNGMSPRTPPRGIHHSGEPVHQKTPR-KSAPN----MSVDSIAMPPPP 177
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -3
Query: 852 PVXIGXQPRAMECFFPVQGGPIHEKCPRGRFTPNSLEPVKDDAVATPPSP 703
PV P+ P P E P G +P ++P +D + PPSP
Sbjct: 180 PVDPSEDPQPSGSSSPGPVDPSDEPSPSGPPSPGPVDPSEDPKPSEPPSP 229
>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
protein.
Length = 1347
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 852 PVXIGXQPRAMECFFPVQGGPIHEKCPRGRFTPNSLEPVKDDAVATPPSP 703
P G PR G P+H+K PR + PN + D++A PP P
Sbjct: 10 PQSNGMSPRTPPRGIHHSGEPVHQKTPR-KSAPN----MSVDSIAMPPPP 54
>AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B
protein.
Length = 1311
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 852 PVXIGXQPRAMECFFPVQGGPIHEKCPRGRFTPNSLEPVKDDAVATPPSP 703
P G PR G P+H+K PR + PN + D++A PP P
Sbjct: 133 PQSNGMSPRTPPRGIHHSGEPVHQKTPR-KSAPN----MSVDSIAMPPPP 177
>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
protein.
Length = 1470
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 852 PVXIGXQPRAMECFFPVQGGPIHEKCPRGRFTPNSLEPVKDDAVATPPSP 703
P G PR G P+H+K PR + PN + D++A PP P
Sbjct: 133 PQSNGMSPRTPPRGIHHSGEPVHQKTPR-KSAPN----MSVDSIAMPPPP 177
>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
Length = 1470
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 852 PVXIGXQPRAMECFFPVQGGPIHEKCPRGRFTPNSLEPVKDDAVATPPSP 703
P G PR G P+H+K PR + PN + D++A PP P
Sbjct: 133 PQSNGMSPRTPPRGIHHSGEPVHQKTPR-KSAPN----MSVDSIAMPPPP 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,947,492
Number of Sequences: 27780
Number of extensions: 453882
Number of successful extensions: 1165
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -