Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30326.Seq
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55851| Best HMM Match : Hydrolase (HMM E-Value=0.95)                59   3e-09
SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.58 
SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)                 30   1.3  
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_12568| Best HMM Match : Na_Ca_ex (HMM E-Value=0.0018)               29   3.1  
SB_17388| Best HMM Match : rve (HMM E-Value=8.2e-17)                   28   5.4  
SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)                  28   7.2  
SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_34460| Best HMM Match : Borrelia_orfA (HMM E-Value=0.3)             27   9.5  
SB_19562| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_5314| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  
SB_812| Best HMM Match : FH2 (HMM E-Value=0)                           27   9.5  

>SB_55851| Best HMM Match : Hydrolase (HMM E-Value=0.95)
          Length = 209

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 24/45 (53%), Positives = 34/45 (75%)
 Frame = +1

Query: 229 RDVAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEV 363
           R +  ++   ++++AD VCFDVDSTV+  E IDELA FCG+G+EV
Sbjct: 2   RQMTESETRVIWKSADAVCFDVDSTVVTGEAIDELASFCGRGEEV 46



 Score = 33.5 bits (73), Expect = 0.14
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +3

Query: 522 LHERGVIVYLVSGGFRSLIEPVA 590
           L   G  VYLVSGGF+S++EP+A
Sbjct: 62  LLSHGTQVYLVSGGFQSILEPIA 84


>SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 21/70 (30%), Positives = 38/70 (54%)
 Frame = -2

Query: 383 ASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRAS 204
           +S+ S  +SS    + +SSS  +S  +  S+S  + S+  NNS  S  ++S  S+   +S
Sbjct: 196 SSSSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSSSSSNNSSSSSSSSSSSSSSSSSS 255

Query: 203 STSRTAGCFS 174
           S+S ++   S
Sbjct: 256 SSSSSSSSSS 265


>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
          Length = 863

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 24/75 (32%), Positives = 41/75 (54%)
 Frame = -2

Query: 398 ILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*ST 219
           + PP +S+    +SSP P + +SSS  SS  +  S+S  + S+  ++S  S  ++S    
Sbjct: 570 VSPPSSSS----SSSPPPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---- 621

Query: 218 PVRASSTSRTAGCFS 174
              +SS+S + G FS
Sbjct: 622 --SSSSSSASLGYFS 634


>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
 Frame = -2

Query: 509  PVIPGVS--LTGNFXMNSLI*PTLGLMMSSLFFKASWNVILPPIASAVSLLTSS-PFPQN 339
            PV+P  +  LT +   +S+   T      SL    + N     +A AV++ +   P   +
Sbjct: 877  PVLPTTTSVLTSSMESSSMA-TTSTSSTPSLESSMTTNSTTSTLAEAVAISSLVLPTTTS 935

Query: 338  LASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRASSTSRTAGCFSNCKE 162
            + +SSM SS M   STS  T S   + +  S  +T   + P+ +S +S T    ++  E
Sbjct: 936  VLTSSMESSSMATTSTS-STPSFESSMTTNSTTSTPAEAVPISSSVSSTTTSVLTSSME 993



 Score = 27.5 bits (58), Expect = 9.5
 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
 Frame = -2

Query: 431 SSLFFKASWNVILPPIASAVSLL--TSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNN 258
           SS+   ++ + ++  +A + S+L  T+S    ++ SSSM ++  T  ST     S   NN
Sbjct: 400 SSMTTNSTTSTLVEAVALSSSVLPTTTSVLTSSMESSSMATTSTT--STPSLESSMTSNN 457

Query: 257 SGQSVGATSR*STPVRASSTS 195
           +  ++      S+PV  ++TS
Sbjct: 458 TTLTLAEAVATSSPVLPTTTS 478


>SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1512

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
 Frame = -2

Query: 389  PIASAVSLLTSSPFP-QNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPV 213
            P+A + SL +SS +  + LAS S   SC +VE+ S + +    N+  +S       S P+
Sbjct: 886  PLAPSTSLTSSSAYSTEGLASGSESGSCPSVEA-SAEAKDCDNNSYSESDSPRREYSDPM 944

Query: 212  RA---SSTSRTAGCFSNCKEPS 156
            R    SS   ++   S+   PS
Sbjct: 945  RGYPNSSIDNSSEADSSLGSPS 966


>SB_12568| Best HMM Match : Na_Ca_ex (HMM E-Value=0.0018)
          Length = 349

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -3

Query: 253 DSLLGRHHADRHQ*ERLQRRVL 188
           DS      ADRH+ ER+QRRVL
Sbjct: 55  DSKAAERRADRHRQERIQRRVL 76


>SB_17388| Best HMM Match : rve (HMM E-Value=8.2e-17)
          Length = 441

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -1

Query: 321 AFILYDGRVYIEANAVRCPEQLRTVCWGDITLIDTSESVFNVAYCR 184
           A ++  G  Y+   A   PEQ  T CW    LI  S+ +    YCR
Sbjct: 110 ANVVLRGPTYLRKTASALPEQTATACW---RLIHLSQCI-ETHYCR 151


>SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)
          Length = 1498

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 187  AVRDVEDALTGVDQRDVAPTDCPELFRTADCVCFD 291
            A    + A+TG+   +V P +  + F    C CF+
Sbjct: 1413 ATNATDTAITGISTYNVIPFEAGQYFNKIQCFCFE 1447


>SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 825

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -2

Query: 326 SMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRASSTSRTAGCFSNCKEPS 156
           S+ SSC +VES   +    V  +S  S     + ++P R   T+  A   S+C++ S
Sbjct: 691 SLTSSCPSVESEPVRQVVHVQIHSSDSDSEKCKETSPTRRKETANLACSQSDCEDAS 747


>SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
 Frame = -2

Query: 362 TSSPFPQNLASSSMPSSCMTVESTSKQTQSAVL---NNSGQSVGATSR*STPVRASSTSR 192
           T  PFP   ASSS+ +   T E T  +  +  +      G S+G        +RASST  
Sbjct: 235 TLDPFPTKTASSSISNKGHTAEKTGYKGITTFIVPRETPGLSIGKKED-KLGIRASSTCP 293

Query: 191 TAGCFSNCKEPS 156
               F N K PS
Sbjct: 294 VH--FDNVKVPS 303


>SB_34460| Best HMM Match : Borrelia_orfA (HMM E-Value=0.3)
          Length = 1102

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = +1

Query: 310 QDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEALKKRLDIIRPNVGQIREFIXKFPVR 489
           QDE  DEL     +    ++ TAEA G     +  +K+ +D++R  +  + + + +  + 
Sbjct: 464 QDETDDELRSTLVRLHATEKKTAEAQGKASQERALIKQDVDVVRNELNAVSDELAQLKMY 523

Query: 490 LT 495
            T
Sbjct: 524 FT 525


>SB_19562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = -2

Query: 359 SSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRASSTSRT 189
           ++P P +   +S+  +   +  TS+     V+ ++GQ +  TSR S P  +   + T
Sbjct: 36  TTPSPMHSGRNSVSPNPQAMPMTSRPQLKVVIPSAGQGLQMTSRSSNPQNSQGQNYT 92


>SB_5314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/70 (22%), Positives = 32/70 (45%)
 Frame = +2

Query: 158 MALYSLKSNLQYATLKTLSLVSISVMSPQQTVRSCSGQRTAFASM*TRPSYKMKASMNWP 337
           +ALY   +++   +L TL   +   +   +T+RSC      ++ + T   Y+     ++ 
Sbjct: 5   LALYDF-TDIVSQSLSTLQSNTFDTIETYETIRSCHSSGCNYSLLPTFAKYEQPTPFSFS 63

Query: 338 SSAGKETRLK 367
            S+  E R K
Sbjct: 64  RSSESEMRKK 73


>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1430

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 226 QRDVAPTDCPELFRTADCVCFDVDSTVIQDEGIDEL 333
           Q ++A T  P + RT       +DSTVI  EG+D+L
Sbjct: 805 QINIALTKLPPI-RTLKQAIISMDSTVIDREGVDKL 839


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,027,830
Number of Sequences: 59808
Number of extensions: 354461
Number of successful extensions: 1192
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)