Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30326.Seq
(630 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl... 103 1e-22
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl... 103 1e-22
At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (AB... 30 1.1
At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ b... 30 1.1
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa... 29 1.9
At3g63140.1 68416.m07091 mRNA-binding protein, putative similar ... 29 2.5
At5g25265.1 68418.m02995 expressed protein 29 3.4
At5g58410.1 68418.m07314 expressed protein contains similarity t... 28 4.4
At3g46400.1 68416.m05030 leucine-rich repeat protein kinase, put... 28 4.4
At1g27960.1 68414.m03425 expressed protein contains Pfam profile... 28 4.4
At1g12140.1 68414.m01406 flavin-containing monooxygenase family ... 28 4.4
At4g33520.3 68417.m04762 metal-transporting P-type ATPase, putat... 28 5.9
At3g05370.1 68416.m00586 disease resistance family protein conta... 28 5.9
At5g07260.1 68418.m00828 homeobox protein-related contains weak ... 27 7.8
At3g08670.1 68416.m01007 expressed protein 27 7.8
>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 103 bits (246), Expect = 1e-22
Identities = 49/106 (46%), Positives = 71/106 (66%)
Frame = +1
Query: 187 AVRDVEDALTGVDQRDVAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVK 366
+V+ E + G + V + +L+R+ + VCFDVDSTV DEGIDELA+FCG G V
Sbjct: 55 SVQPHELSTLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVA 114
Query: 367 RLTAEAMGGNMTFQEALKKRLDIIRPNVGQIREFIXKFPVRLTPGI 504
TA AMGG++ F+EAL RL + +P++ ++ E++ K P RL+PGI
Sbjct: 115 EWTARAMGGSVPFEEALAARLSLFKPSLSKVEEYLDKRPPRLSPGI 160
Score = 37.5 bits (83), Expect = 0.007
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +3
Query: 510 LVKELHERGVIVYLVSGGFRSLIEPVA 590
LVK+L + VYL+SGGFR +I PVA
Sbjct: 163 LVKKLRANNIDVYLISGGFRQMINPVA 189
>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 103 bits (246), Expect = 1e-22
Identities = 49/106 (46%), Positives = 71/106 (66%)
Frame = +1
Query: 187 AVRDVEDALTGVDQRDVAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVK 366
+V+ E + G + V + +L+R+ + VCFDVDSTV DEGIDELA+FCG G V
Sbjct: 55 SVQPHELSTLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVA 114
Query: 367 RLTAEAMGGNMTFQEALKKRLDIIRPNVGQIREFIXKFPVRLTPGI 504
TA AMGG++ F+EAL RL + +P++ ++ E++ K P RL+PGI
Sbjct: 115 EWTARAMGGSVPFEEALAARLSLFKPSLSKVEEYLDKRPPRLSPGI 160
Score = 37.5 bits (83), Expect = 0.007
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +3
Query: 510 LVKELHERGVIVYLVSGGFRSLIEPVA 590
LVK+L + VYL+SGGFR +I PVA
Sbjct: 163 LVKKLRANNIDVYLISGGFRQMINPVA 189
>At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (ABI3)
identical to abscisic acid-insensitive protein 3
GI:16146 SP:Q01593 from [Arabidopsis thaliana], (Plant
Cell 4 (10), 1251-1261 (1992))
Length = 720
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 389 PIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQ 249
P S+ S ++SP P N SS SS STS A+L + G+
Sbjct: 80 PCMSSSSSSSTSPAPVNAIVSSASSSSAASSSTSSAASWAILRSDGE 126
>At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ
boundaries domain protein 13 (LBD13) identical to LOB
DOMAIN 13 [Arabidopsis thaliana] GI:17227158 SP|Q9AT61
Length = 268
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -2
Query: 392 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSA 270
PP LL+S P P S+PS M V S+S SA
Sbjct: 199 PPTPRPPRLLSSQPAPPPTPPVSLPSPSMVVSSSSSSNSSA 239
>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 997
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -2
Query: 359 SSPFPQNLASSSMPSSCMTVESTSKQ--TQSAVLNNSGQSVGATSR*STPVRASSTSRTA 186
S P + + PS TV +T+ + S++ N+ Q +G++ STP S+ +
Sbjct: 444 SQPTTPSFGQPTTPSFRSTVSNTTSVFGSSSSLTTNTSQPLGSSIFGSTPAHGSTPGFSI 503
Query: 185 GCFSN 171
G F+N
Sbjct: 504 GGFNN 508
>At3g63140.1 68416.m07091 mRNA-binding protein, putative similar to
mRNA binding protein precursor (GI:26453355)
[Lycopersicon esculentum]
Length = 406
Score = 29.1 bits (62), Expect = 2.5
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Frame = -2
Query: 440 LMMSSLFFKASW-----NVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVES--TSKQ 282
L SSLFF + N+++PP SL +SS +L+SSS SS + S TS++
Sbjct: 4 LSSSSLFFSSKTTSPISNLLIPPSLHRFSLPSSSSSFSSLSSSSSSSSSLLTFSLRTSRR 63
Query: 281 TQSAVLNNSGQSVG 240
SVG
Sbjct: 64 LSPQKFTVKASSVG 77
>At5g25265.1 68418.m02995 expressed protein
Length = 366
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 231 TLIDTSESVFNVAYCRLLFKL*RAISVASSPSNETIMIEFTSIL 100
T + S+SV+N CR+++ + I ++ P +E M FT IL
Sbjct: 72 TAVTASDSVYNTWQCRVMYYWFKKIQASAGPGSE--MGGFTRIL 113
>At5g58410.1 68418.m07314 expressed protein contains similarity to
hypothetical proteins
Length = 1873
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 119 IIIVSLLGEEATEMALYSLKSNLQYATLKTLSLVSISVMSPQQTVRS 259
+I+V+ E + + +SLKS Q ATL T L SI ++ + + S
Sbjct: 831 VIVVAKFAAEVIDGSFFSLKSLSQDATLLTTVLSSIFIIDLENRMTS 877
>At3g46400.1 68416.m05030 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 883
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 425 LFFKASWNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVEST 291
L K + N LPP+ +A+ + T FPQ+ + S+ ++ T
Sbjct: 333 LELKRTQNSTLPPLLTAIEVFTVIDFPQSKTNEDDVSAIKNIKDT 377
>At1g27960.1 68414.m03425 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 539
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 253 PELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGN 396
P T + D +V+QD+ I FCG+G E + A+ N
Sbjct: 12 PPTTTTGSFTGLNTDQSVLQDQDIVSSRPFCGQGTESFHIGADTPRSN 59
>At1g12140.1 68414.m01406 flavin-containing monooxygenase family
protein / FMO family protein similar to
flavin-containing monooxygenase [Cavia porcellus]
GI:191259; contains Pfam profile PF00743: Flavin-binding
monooxygenase-like
Length = 459
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 399 DIPGSLEEETGHHQA*RRSDQRIHXEISS*TNSWYYRLVKELHERGVIVY 548
DI G +E H A R + + + ++ N W + +++ +HE G IV+
Sbjct: 223 DITGVAKEV---HIASRSNPSKTYSKLPGSNNLWLHSMIESVHEDGTIVF 269
>At4g33520.3 68417.m04762 metal-transporting P-type ATPase, putative
(PAA1) nearly identical to gi:2668492; contains Pfam
heavy-metal-associated domain PF00403
Length = 949
Score = 27.9 bits (59), Expect = 5.9
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = -2
Query: 506 VIPGVSLTGNFXMNSLI*PTLGLMMSSLFFKASWNVILPPIASAVSLLTSSPFPQNLASS 327
V+ G LT L T+ + +L++ +N++ PIA+ V L P + +
Sbjct: 839 VLMGNRLTQLLDAMELSRQTMKTVKQNLWWAFGYNIVRIPIAAGVLL----PLTGTMLTP 894
Query: 326 SMPSSCMTVESTSKQTQSAVL 264
SM + M V S T S +L
Sbjct: 895 SMAGALMGVSSLGVMTNSLLL 915
>At3g05370.1 68416.m00586 disease resistance family protein contains
leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2 disease resistance
protein GB:AAC15780 from [Lycopersicon pimpinellifolium]
Length = 860
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = +1
Query: 211 LTGVDQRDVAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMG 390
LTG D D ++ P + + + F VDS I ++G++ K + ++V +
Sbjct: 622 LTGEDG-DFRLSEAPYMGKVLNATAFFVDSMEIVNKGVETEFKRINEENKVINFSGNRFS 680
Query: 391 GNMTFQEALKKRL 429
GN+ L K L
Sbjct: 681 GNIPESIGLLKEL 693
>At5g07260.1 68418.m00828 homeobox protein-related contains weak
similarity to Homeobox protein FWA (Swiss-Prot:Q9FVI6)
[Arabidopsis thaliana]
Length = 541
Score = 27.5 bits (58), Expect = 7.8
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -1
Query: 405 ECHIAAHCFRRQSFNLVSFPAELGQFIDAFI 313
EC + A C+ + +V+ P ELG +++ +
Sbjct: 496 ECFVTASCYVKADQTMVTSPNELGSYMENMV 526
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -2
Query: 347 PQNLASSSMPSSCMTVES--TSKQTQSAVLNNSGQSVGATSR*STPVRASSTS 195
P +S + PS + S TS ++ S++LN S SV + R S+P SS+S
Sbjct: 151 PARSSSVTRPSISTSQYSSFTSGRSPSSILNTSSASVSSYIRPSSPSSRSSSS 203
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,699,014
Number of Sequences: 28952
Number of extensions: 246175
Number of successful extensions: 786
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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