Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30323.Seq
(967 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0290 + 2246791-2247027,2248089-2248346 114 9e-26
10_08_0310 - 16669565-16669822,16670558-16670794 111 6e-25
01_06_1794 - 39919363-39920025 29 4.2
08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230... 29 5.5
06_03_1007 + 26869731-26870429,26871262-26871387 29 5.5
12_02_1003 - 25183468-25184010,25184295-25184551,25184795-251849... 29 7.3
10_05_0085 - 9005539-9005922,9006207-9006463,9006707-9006883,900... 29 7.3
09_04_0139 + 15030753-15031208,15031298-15031523,15031599-150319... 29 7.3
01_03_0278 - 14509481-14509506,14510700-14512291,14512547-145126... 29 7.3
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 29 7.3
05_03_0549 - 15349259-15349346,15349466-15349585,15349899-153500... 28 9.7
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 114 bits (275), Expect = 9e-26
Identities = 55/111 (49%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Frame = +2
Query: 17 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 196
M G R TRDLFAR FR G IPL+TY++ YK+GD VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
Query: 197 TGRVYNVTAHALGVIVNKRVAEGLYRS-ASISVLSMSSTPSADKTSLRESK 346
TGRV+NVT A+GV +NK+V + R + V + + ++ LR+ K
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIK 111
Score = 66.9 bits (156), Expect = 2e-11
Identities = 33/76 (43%), Positives = 48/76 (63%)
Frame = +1
Query: 262 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 441
RII KRI++RVEHV+ S+C ++ R +N++L +AKA G+ ++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAKARGEVISTKRQPEGPKPGFMVE 142
Query: 442 GTEKPVLLAPIPYXFV 489
G + PIPY V
Sbjct: 143 GATLET-VTPIPYDVV 157
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 111 bits (268), Expect = 6e-25
Identities = 50/86 (58%), Positives = 63/86 (73%)
Frame = +2
Query: 17 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 196
M G R TRDLFAR FR G IPL+TY++ YK+G+ VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60
Query: 197 TGRVYNVTAHALGVIVNKRVAEGLYR 274
TGRV+NVT A+GV +NK+V + R
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIR 86
Score = 69.3 bits (162), Expect = 4e-12
Identities = 34/76 (44%), Positives = 49/76 (64%)
Frame = +1
Query: 262 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 441
RII KRI++RVEHV+ S+C ++F R +N++L +AKA G+ ++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAKARGEVISTKRQPQGPKPGFMVE 142
Query: 442 GTEKPVLLAPIPYXFV 489
G + PIPY V
Sbjct: 143 GATLET-VTPIPYDVV 157
>01_06_1794 - 39919363-39920025
Length = 220
Score = 29.5 bits (63), Expect = 4.2
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 337 RVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPI 474
R ++ ++ EA AAG + KRQP PP SG A +
Sbjct: 27 RQQQQQQQQYEAAAAGDKTSAKRQPPPPSRLKKTSGRNDDAATAAV 72
>08_01_0283 -
2304024-2304111,2304224-2304343,2304594-2304715,
2304824-2305096,2305454-2305558,2305635-2305851,
2306012-2306262,2306518-2306724,2307087-2307351,
2308655-2308749
Length = 580
Score = 29.1 bits (62), Expect = 5.5
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 124 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCS 225
W H QW YAT+ I W+ R+ V D S
Sbjct: 535 WISIGHSTQWLWYSVYATKQISWRTRALVISDWS 568
>06_03_1007 + 26869731-26870429,26871262-26871387
Length = 274
Score = 29.1 bits (62), Expect = 5.5
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +2
Query: 236 VIVNKRVAEGLYRSASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARP 391
V+V EG Y S + + S S +AD + RG R+PR ARP
Sbjct: 55 VVVEVEEEEG-YESGASAASSTSCVSTADSDVAASAAARRGRRRRPRAAARP 105
>12_02_1003 -
25183468-25184010,25184295-25184551,25184795-25184971,
25185438-25185905,25186720-25186730,25187589-25187599
Length = 488
Score = 28.7 bits (61), Expect = 7.3
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = -3
Query: 812 GPIYQKFNPNFNKILTXQFAIRQFKL----RKMLERAIGTGLXRYYXQLAKGGCAARRLS 645
GP+Y K N +I+ AI F+L ++ R + RYY QL + RR
Sbjct: 213 GPLYAKLRKNDREIMAIINAINAFRLYLGFKEFTVRIDCEAICRYYNQLNSKKSSTRR-- 270
Query: 644 WV 639
WV
Sbjct: 271 WV 272
>10_05_0085 -
9005539-9005922,9006207-9006463,9006707-9006883,
9007349-9007490,9007814-9007904,9009024-9010942
Length = 989
Score = 28.7 bits (61), Expect = 7.3
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = -3
Query: 812 GPIYQKFNPNFNKILTXQFAIRQFKL----RKMLERAIGTGLXRYYXQLAKGGCAARRLS 645
GP+Y K N +I+ AI F+L +++ R + RYY QL + RR
Sbjct: 767 GPLYAKLIKNDREIMAIINAINAFRLYLGFKELTVRTDCEAICRYYNQLNSKKSSTRR-- 824
Query: 644 WV 639
WV
Sbjct: 825 WV 826
>09_04_0139 +
15030753-15031208,15031298-15031523,15031599-15031981,
15032353-15032685,15032902-15033010,15033089-15033465
Length = 627
Score = 28.7 bits (61), Expect = 7.3
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 591 NCNTTHYRANWVPGPP-SKFFXXXXFFKKFYWTLRY 487
+ + THY A+ V PP ++ F F K W RY
Sbjct: 585 DAHLTHYHAHLVDNPPTARVFVTLAFAHKVTWVARY 620
>01_03_0278 -
14509481-14509506,14510700-14512291,14512547-14512638,
14513030-14514412
Length = 1030
Score = 28.7 bits (61), Expect = 7.3
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +1
Query: 583 ITIHWPS--FYNVVTGKTLGVTQLNRLAAH 666
+ IHWP F +V+ KTLG+ N+L +
Sbjct: 827 VLIHWPEKEFQGLVSLKTLGIVSCNKLKGY 856
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 28.7 bits (61), Expect = 7.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 116 YKVGDIVDIRGNGAVQKGMPHKVY 187
++ GDI+ I G+G+V K PH++Y
Sbjct: 623 FEDGDIIVIWGDGSVSKVGPHEIY 646
>05_03_0549 -
15349259-15349346,15349466-15349585,15349899-15350020,
15350511-15350783,15351398-15351502,15351588-15351804,
15352031-15352281,15352582-15352776,15352881-15353139,
15354617-15354714
Length = 575
Score = 28.3 bits (60), Expect = 9.7
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +1
Query: 124 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRD 219
W H H QW YA++ W+ R V D
Sbjct: 530 WIHVGHSTQWLWYSVYASKQFSWRTRMLVVSD 561
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,479,547
Number of Sequences: 37544
Number of extensions: 550740
Number of successful extensions: 1467
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2799822860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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