Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30323.Seq
(967 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal prote... 119 4e-27
Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical pr... 33 0.23
Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical pr... 33 0.23
Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical pr... 33 0.23
AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical... 30 2.1
U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical pr... 29 3.7
AL132853-5|CAB60443.1| 279|Caenorhabditis elegans Hypothetical ... 29 5.0
AC006769-14|AAF60579.1| 378|Caenorhabditis elegans Hypothetical... 29 5.0
Z66523-1|CAA91411.1| 361|Caenorhabditis elegans Hypothetical pr... 29 6.5
Z49966-3|CAA90241.1| 361|Caenorhabditis elegans Hypothetical pr... 29 6.5
Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical pr... 29 6.5
Z78016-1|CAB01439.1| 276|Caenorhabditis elegans Hypothetical pr... 28 8.7
>L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 21 protein.
Length = 161
Score = 119 bits (286), Expect = 4e-27
Identities = 55/80 (68%), Positives = 63/80 (78%)
Frame = +2
Query: 17 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 196
MTNSKG RRGTR +FAR FR HG LSTY YK GD+VDI+ NGA QKGMP K YHG+
Sbjct: 1 MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60
Query: 197 TGRVYNVTAHALGVIVNKRV 256
TGR++NVT A+G+IVNKRV
Sbjct: 61 TGRIFNVTRGAVGIIVNKRV 80
Score = 89.0 bits (211), Expect = 4e-18
Identities = 44/81 (54%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Frame = +1
Query: 256 RGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTV-NLKRQPAPPKAAH 432
RG I+PKRINIR+EH+K SKCR DFL RVK N+ K AK+AG+ V LKR P P+ AH
Sbjct: 81 RGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRLPVAPRGAH 140
Query: 433 -IVSGTEKPVLLAPIPYXFVA 492
+ + +P LLAP+ + VA
Sbjct: 141 TVTTQNNEPELLAPLRFEIVA 161
>Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical
protein W06F12.2c protein.
Length = 502
Score = 33.5 bits (73), Expect = 0.23
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -2
Query: 201 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 64
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical
protein W06F12.2b protein.
Length = 568
Score = 33.5 bits (73), Expect = 0.23
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -2
Query: 201 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 64
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical
protein W06F12.2a protein.
Length = 562
Score = 33.5 bits (73), Expect = 0.23
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -2
Query: 201 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 64
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265
>AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical
protein Y73B6BL.1 protein.
Length = 751
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +1
Query: 118 QSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQAC 255
Q RHC Q C S Y W+ RSRV +C+ + Q C
Sbjct: 366 QPVRHCSEQDATCDSPFYWCDMKLWRCRSRVVYGGNCTGYEGTQIC 411
>U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical
protein ZK418.6 protein.
Length = 825
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 394 NLKRQPAPPKAAHIVSGTE 450
NL+R+PAPPK H+ S E
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480
>AL132853-5|CAB60443.1| 279|Caenorhabditis elegans Hypothetical
protein Y80D3A.9 protein.
Length = 279
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 459 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 373
DG LS D+ RG+WL + G G L
Sbjct: 39 DGMLSGVDEKDVARGTWLGMDAHGKVGML 67
>AC006769-14|AAF60579.1| 378|Caenorhabditis elegans Hypothetical
protein Y45G12C.1 protein.
Length = 378
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 312 GVLDMLNT-DIDALRYNPSATRLLTITPRA*AVTLYTRPVFPWYTLCGI 169
G+LD T DID L+ N + +L + A T +T + W+TLC +
Sbjct: 272 GLLDYFPTFDIDDLKSNEKSLQLSAMLVYL-ARTQFTLDILKWHTLCAL 319
>Z66523-1|CAA91411.1| 361|Caenorhabditis elegans Hypothetical
protein M05D6.1 protein.
Length = 361
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/74 (24%), Positives = 32/74 (43%)
Frame = +1
Query: 40 PRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRD 219
PR++ + R V Y +L+VH + RH + AT ++PWK + + +
Sbjct: 183 PRNKSMFRGTV----RYCSLNVHLHKEQGRHDDLYGALYAMIETATSTLPWKGKPKKETS 238
Query: 220 CSCSRCDCQQACRG 261
+ Q C+G
Sbjct: 239 ALKEKTTDVQLCKG 252
>Z49966-3|CAA90241.1| 361|Caenorhabditis elegans Hypothetical
protein F35C11.3 protein.
Length = 361
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/74 (24%), Positives = 32/74 (43%)
Frame = +1
Query: 40 PRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRD 219
PR++ + R V Y +L+VH + RH + AT ++PWK + + +
Sbjct: 183 PRNKSMFRGTV----RYCSLNVHLHKEQGRHDDLYGALYAMIETATSTLPWKGKPKKETS 238
Query: 220 CSCSRCDCQQACRG 261
+ Q C+G
Sbjct: 239 ALKEKTTDVQLCKG 252
>Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical
protein F49E2.5d protein.
Length = 889
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 292 VEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVN-LKRQPAPPKAAHIVSGTEKPVLLA 468
VE+V + K+N++ K++++ T ++ PAPP+ +V EKPV A
Sbjct: 361 VENVVEKSTTPPATENKKKNKKDKKKSESEKVTEQPVESAPAPPQVEQVVEKVEKPV--A 418
Query: 469 PI 474
P+
Sbjct: 419 PV 420
>Z78016-1|CAB01439.1| 276|Caenorhabditis elegans Hypothetical
protein R186.1 protein.
Length = 276
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 459 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 373
DG LS D + RG+WL L +G G +
Sbjct: 39 DGILSGVDKQENARGTWLGLNENGRIGMM 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,430,869
Number of Sequences: 27780
Number of extensions: 444089
Number of successful extensions: 1292
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2500474882
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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