Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30323.Seq
         (967 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   5.5  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   7.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   7.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   7.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   7.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   9.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 459  DGFLSSTDDVGSFRGSW 409
            DG  SS  D GS  GSW
Sbjct: 1064 DGITSSGSDSGSSNGSW 1080


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 9/52 (17%), Positives = 19/52 (36%)
 Frame = -1

Query: 208 HATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSSMCAEPASEQV 53
           H   L  V      +  CT+  + +     +  H++   +SS+   P    +
Sbjct: 245 HVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKTHSDSSVVGSPRDSPI 296


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 697 FAITPSWRKGDVL 659
           +AIT SW+ GDV+
Sbjct: 98  WAITVSWKAGDVM 110


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 136 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 234
           R Q+ + +   Y      WK+RSR + +   SR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 136 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 234
           R Q+ + +   Y      WK+RSR + +   SR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 136 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 234
           R Q+ + +   Y      WK+RSR + +   SR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 136 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 234
           R Q+ + +   Y      WK+RSR + +   SR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 621 SHDVVKRRPVNCNTTHYRANWVPGP 547
           S +  K++P +C+T  YR   V  P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 265,033
Number of Sequences: 438
Number of extensions: 5512
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31806957
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)