Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30323.Seq
(967 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 116 2e-26
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 116 2e-26
At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60... 114 7e-26
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi... 114 7e-26
At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138... 37 0.017
At1g54926.1 68414.m06272 hypothetical protein 31 0.87
At3g45880.1 68416.m04965 hypothetical protein 29 3.5
At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transfera... 29 4.6
At4g24350.1 68417.m03494 phosphorylase family protein contains P... 29 4.6
At5g25320.1 68418.m03004 ACT domain-containing protein contains ... 28 8.1
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 28 8.1
At2g13150.1 68415.m01450 expressed protein contains a bZIP trans... 28 8.1
>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
to ribosomal protein L21 (gb|L38826). ESTs
gb|AA395597,gb|ATTS5197 come from this gene
Length = 164
Score = 116 bits (279), Expect = 2e-26
Identities = 55/111 (49%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = +2
Query: 17 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 196
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 197 TGRVYNVTAHALGVIVNKRVAEGLYRS-ASISVLSMSSTPSADKTSLRESK 346
TGR++NVT A+GV VNK++ + R + V + + A++ LR+ K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111
Score = 72.9 bits (171), Expect = 3e-13
Identities = 36/76 (47%), Positives = 49/76 (64%)
Frame = +1
Query: 262 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 441
RII KRI++RVEHV+ S+C ++F R K+N+ L AKA G+T++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVE 142
Query: 442 GTEKPVLLAPIPYXFV 489
G + PIPY V
Sbjct: 143 GMTLET-VTPIPYDVV 157
>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
to L21 family of ribosomal protein; amino acid sequence
is identical to F21M12.8
Length = 164
Score = 116 bits (279), Expect = 2e-26
Identities = 55/111 (49%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = +2
Query: 17 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 196
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 197 TGRVYNVTAHALGVIVNKRVAEGLYRS-ASISVLSMSSTPSADKTSLRESK 346
TGR++NVT A+GV VNK++ + R + V + + A++ LR+ K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111
Score = 72.9 bits (171), Expect = 3e-13
Identities = 36/76 (47%), Positives = 49/76 (64%)
Frame = +1
Query: 262 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 441
RII KRI++RVEHV+ S+C ++F R K+N+ L AKA G+T++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVE 142
Query: 442 GTEKPVLLAPIPYXFV 489
G + PIPY V
Sbjct: 143 GMTLET-VTPIPYDVV 157
>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
ribosomal protein L21 GI:3885884 from [Oryza sativa]
Length = 164
Score = 114 bits (275), Expect = 7e-26
Identities = 54/111 (48%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = +2
Query: 17 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 196
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 197 TGRVYNVTAHALGVIVNKRVAEGLYRS-ASISVLSMSSTPSADKTSLRESK 346
TGR++NVT A+GV VNK++ + R + V + + A++ LR+ +
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111
Score = 73.7 bits (173), Expect = 2e-13
Identities = 36/76 (47%), Positives = 50/76 (65%)
Frame = +1
Query: 262 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 441
RII KRI++RVEHV+ S+C ++F R K+N+ L +AKA G+T++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVE 142
Query: 442 GTEKPVLLAPIPYXFV 489
G + PIPY V
Sbjct: 143 GMTLET-VTPIPYDVV 157
>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
[Arabidopsis thaliana]
Length = 164
Score = 114 bits (275), Expect = 7e-26
Identities = 54/111 (48%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = +2
Query: 17 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 196
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 197 TGRVYNVTAHALGVIVNKRVAEGLYRS-ASISVLSMSSTPSADKTSLRESK 346
TGR++NVT A+GV VNK++ + R + V + + A++ LR+ +
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111
Score = 73.7 bits (173), Expect = 2e-13
Identities = 36/76 (47%), Positives = 50/76 (65%)
Frame = +1
Query: 262 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 441
RII KRI++RVEHV+ S+C ++F R K+N+ L +AKA G+T++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVE 142
Query: 442 GTEKPVLLAPIPYXFV 489
G + PIPY V
Sbjct: 143 GMTLET-VTPIPYDVV 157
>At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 672
Score = 37.1 bits (82), Expect = 0.017
Identities = 23/65 (35%), Positives = 30/65 (46%)
Frame = +2
Query: 167 GMPHKVYHGKTGRVYNVTAHALGVIVNKRVAEGLYRSASISVLSMSSTPSADKTSLRESK 346
G P K Y+G GR+ AHAL NK + L+R L+ P AD+ S + S
Sbjct: 182 GKPKKTYNGTYGRLLAYAAHALAEGQNKLEPKELWREPKDQALAWK--PCADQRSWKPSD 239
Query: 347 RMRGY 361
GY
Sbjct: 240 GKNGY 244
>At1g54926.1 68414.m06272 hypothetical protein
Length = 273
Score = 31.5 bits (68), Expect = 0.87
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 235 CDCQQACRGRIIPKRINIRVEHVKHSK 315
CD + C+ R+ PK +I +H KH K
Sbjct: 59 CDLSEGCKNRMTPKAFHIISQHPKHHK 85
>At3g45880.1 68416.m04965 hypothetical protein
Length = 431
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = -2
Query: 411 WLSLQVDGLAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSATRL 247
W +Q D FLQ L SL VLS D ++D + ++ PSAT L
Sbjct: 299 WYDMQFDIKYAYFNFLQSLLYKSSSLNPVLSWREDEDSESSDAEGSKFTPSATNL 353
>At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 450
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = -1
Query: 250 LVDNHTESMSSHVVHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERN 89
L N S V + + FVW LLN SDV+ V +H R ERN
Sbjct: 346 LTHNGWNSTVESVFEGVPMICMPFVWDQLLNARFVSDVWMVG--LHLEGRIERN 397
>At4g24350.1 68417.m03494 phosphorylase family protein contains Pfam
PF01048: Phosphorylase family
Length = 336
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 142 DVYNVSNFVHFHVRGERNSSM 80
DV+NV VHF + G N+SM
Sbjct: 114 DVFNVKGIVHFGIAGNMNNSM 134
>At5g25320.1 68418.m03004 ACT domain-containing protein contains
Pfam ACT domain PF01842
Length = 500
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 154 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 246
C +GY+ ++ KDR R+ D C+ D Q
Sbjct: 291 CEERGYSIVTVKSKDRRRLMFDTICTLVDMQ 321
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase family
protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +1
Query: 277 RINIRVEHVKHSKCRQDFLKRVKENERL 360
+ ++++EHV S RQ+F + +K NE++
Sbjct: 920 KFHVKIEHVDRSVRRQEFGRIIKTNEKV 947
>At2g13150.1 68415.m01450 expressed protein contains a bZIP
transcription factor basic domain signature (PDOC00036)
Length = 262
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +2
Query: 296 SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRNPS 460
S +STPS ++ + S P L PS+ R + +PL P++SVE R+ S
Sbjct: 4 SDNSTPSRPRSITQPSLAFSSL---PPLSPSPSSSRRNSIPLMNPSASVESRDSS 55
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,525,606
Number of Sequences: 28952
Number of extensions: 420522
Number of successful extensions: 1046
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2334107520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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