Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30321.Seq
(904 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 192 4e-50
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 28 1.6
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 27 3.6
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 27 4.8
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 6.4
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 6.4
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 26 6.4
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 8.4
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 26 8.4
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 8.4
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 192 bits (469), Expect = 4e-50
Identities = 116/275 (42%), Positives = 155/275 (56%), Gaps = 2/275 (0%)
Frame = +2
Query: 53 NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 232
N D S +D +TAILR+K +PN L+V++A +DDNSV+ LS ME LQLFRGDTV++K
Sbjct: 21 NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVK 80
Query: 233 GKRRKETV--ASCSQTIIALMRKFG*TVLXXTNFGXXXPXGEPXVXGPSVKYGKRVHILP 406
GKRRK+TV + + + + V N P +KY +R+ +LP
Sbjct: 81 GKRRKDTVLIVLTDEEMEDGVARINRVV--RNNLRVRLGDIVTINPCPDIKYAERISVLP 138
Query: 407 IXDSXEGLTGNLFEVYLKPYFMXAYRPIHRDDTFWSAGACAPSSSKWSKQIHHHFASWAP 586
+ D+ EGLTG+LF+VYLKPYF+ AYRPI + D F G+ K F +
Sbjct: 139 LADTVEGLTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGSMRQVEFKVVDVAPDEFGIVSQ 198
Query: 587 DTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIXGMGGXATXSXLHXSKAIXGEA 766
DT+IH +GEPI RE+EE +L VGYDDIGGCR+Q+AQI + K+I G
Sbjct: 199 DTIIHWEGEPINREDEESSLAEVGYDDIGGCRRQMAQIRELVELPLRHP-QLFKSI-GIK 256
Query: 767 SXXAFLHVWGXLVPXKHPIARAVAXWKXGAFFLFN 871
L ++G K +ARAVA FFL N
Sbjct: 257 PPRGIL-MYGPPGTGKTLMARAVANETGAFFFLIN 290
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMNRVVXNXLR 330
+ +G+ + IVL+D+ D R+NRVV N LR
Sbjct: 78 VVKGKRRKDTVLIVLTDEEMEDGVARINRVVRNNLR 113
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 78 LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 191
L + R + DP ++ + Q + T+SWH FH +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 27.1 bits (57), Expect = 3.6
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 27 FLDSNNKF*IKWQIIKALMIYRPRSSVARTDPTVS--LSKKQSAMTTQSWHFHRPKWSNF 200
F+++N K KW++ A+ P S + + PT+S + + SA TT +RP S
Sbjct: 286 FIEANIK---KWRLAPAVGSLAPPPSYSTSQPTISWDAASESSAGTTTQGDTNRPDKSKN 342
Query: 201 NS 206
S
Sbjct: 343 RS 344
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 26.6 bits (56), Expect = 4.8
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -2
Query: 549 DHFELDGAHAPAD-QKVSSRWIGR*AXMKYGFKYTSNRLPVRPSXESSIGSMWTRF 385
DH L +H PA+ K I A + G T +PV P+ ++G + TRF
Sbjct: 355 DHCYLQLSHLPAEILKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRF 410
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 26.2 bits (55), Expect = 6.4
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +1
Query: 790 MGPPGTGKTPHCXG 831
+GPPG+GK+ +C G
Sbjct: 8 VGPPGSGKSTYCFG 21
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 763 SLQXGISPCMGPPGTGKTPHCXG 831
S+ G + GPPGTGKT G
Sbjct: 1283 SVNDGFTLIQGPPGTGKTKTILG 1305
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +1
Query: 793 GPPGTGKTPHCXGCCXMETXGFL 861
GPPGTGKT C FL
Sbjct: 226 GPPGTGKTLLARACAAQSNATFL 248
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 99 SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSRAN 239
SSV S S ++M++ + +F+ S+ +SSV T + S +N
Sbjct: 329 SSVVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSN 375
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 77 PD-DLSTAILRRKDRPNRLIVEEAVSD 154
PD D + + + RK+ PNRL++ A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +2
Query: 50 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 208
L +A N + L+T +RK + N ++ +A ++ N+ +++ A E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,356,564
Number of Sequences: 5004
Number of extensions: 61319
Number of successful extensions: 204
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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