Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30321.Seq
(904 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 207 1e-53
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 206 2e-53
08_02_0657 - 19749835-19751942,19753123-19753561 143 1e-34
09_06_0271 + 21959213-21960559 30 2.9
06_01_0057 - 483710-484309 29 5.1
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 29 6.7
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 29 6.7
03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446... 28 8.8
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 207 bits (505), Expect = 1e-53
Identities = 126/270 (46%), Positives = 151/270 (55%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
AD K D STAIL RK PNRL+V+EA +DDNSVVAL ME+LQLFRGDTVLLKGK+
Sbjct: 11 ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKK 70
Query: 242 RKETVASCSQTIIALMRKFG*TVLXXTNFGXXXPXGEPXVXGPSVKYGKRVHILPIXDSX 421
RK+T+ K + N VKYGKRVHILPI D+
Sbjct: 71 RKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHILPIDDTV 130
Query: 422 EGLTGNLFEVYLKPYFMXAYRPIHRDDTFWSAGACAPSSSKWSKQIHHHFASWAPDTVIH 601
EG+TGNLF+ +LKPYF+ AYRP+ + D F G K + + APDT I
Sbjct: 131 EGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPTEYCIVAPDTEIF 190
Query: 602 CDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIXGMGGXATXSXLHXSKAIXGEASXXAF 781
CDGEPIKRE+EE L+ VGYDD+GG RKQ+AQI + K+I G
Sbjct: 191 CDGEPIKREDEER-LDEVGYDDVGGVRKQMAQIRELVELPLRHP-QLFKSI-GVKPPKGI 247
Query: 782 LHVWGXLVPXKHPIARAVAXWKXGAFFLFN 871
L ++G K IARAVA FFL N
Sbjct: 248 L-LYGPPGSGKTLIARAVANETGAFFFLIN 276
Score = 57.2 bits (132), Expect = 2e-08
Identities = 39/119 (32%), Positives = 53/119 (44%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMNRVVXNXLRXXXXXXXXXXXXXXXEIWKTSPHT 402
L +G+ + CIVL+D+ C + KIRMN+VV LR + K
Sbjct: 65 LLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHIL 124
Query: 403 AN*XFX*GSYWQSIRSILEAVLHGGLPSDPS*RHLLVRGGMRAVEFKVVETDPSPFCIV 579
G + L+ LVRGGMR+VEFKV+ETDP+ +CIV
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPTEYCIV 183
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 206 bits (503), Expect = 2e-53
Identities = 123/270 (45%), Positives = 151/270 (55%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
+D K D STAIL RK PNRL+V+EA +DDNSV+ + ME+LQLFRGDTVLLKGK+
Sbjct: 11 SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLKGKK 70
Query: 242 RKETVASCSQTIIALMRKFG*TVLXXTNFGXXXPXGEPXVXGPSVKYGKRVHILPIXDSX 421
RK+T+ K + N P VKYGKRVHILPI D+
Sbjct: 71 RKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTV 130
Query: 422 EGLTGNLFEVYLKPYFMXAYRPIHRDDTFWSAGACAPSSSKWSKQIHHHFASWAPDTVIH 601
EG+TGNLF+ +LKPYF+ AYRP+ + D F G K + + APDT I
Sbjct: 131 EGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRGGMRSVEFKVIETDPAEYCIVAPDTEIF 190
Query: 602 CDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIXGMGGXATXSXLHXSKAIXGEASXXAF 781
CDGEPIKRE+EE L+ VGYDD+GG RKQ+AQI + K+I G
Sbjct: 191 CDGEPIKREDEER-LDEVGYDDVGGVRKQMAQIRELVELPLRHP-QLFKSI-GVKPPKGI 247
Query: 782 LHVWGXLVPXKHPIARAVAXWKXGAFFLFN 871
L ++G K IARAVA FFL N
Sbjct: 248 L-LYGPPGSGKTLIARAVANETGAFFFLIN 276
Score = 58.4 bits (135), Expect = 7e-09
Identities = 40/119 (33%), Positives = 53/119 (44%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMNRVVXNXLRXXXXXXXXXXXXXXXEIWKTSPHT 402
L +G+ + CIVL+DD C + KIRMN+VV LR + K
Sbjct: 65 LLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHIL 124
Query: 403 AN*XFX*GSYWQSIRSILEAVLHGGLPSDPS*RHLLVRGGMRAVEFKVVETDPSPFCIV 579
G + L+ LVRGGMR+VEFKV+ETDP+ +CIV
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRGGMRSVEFKVIETDPAEYCIV 183
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 143 bits (347), Expect = 1e-34
Identities = 89/213 (41%), Positives = 121/213 (56%), Gaps = 7/213 (3%)
Frame = +2
Query: 83 DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRK 247
D STAIL +K PNRL+ ++A V+ DNS V LS+A ME+L +FRGD V L+G+RR+
Sbjct: 16 DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75
Query: 248 ETVASCSQTIIALMRKFG*TVLXXTNFGXXXPXGEPXVXGPSVKYGKRVHILPIXDSXEG 427
E V + + + +N P+++ KRV + P DS EG
Sbjct: 76 EAVCYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPFDDSVEG 135
Query: 428 LTGNLFEVYLKPYFMXAYRPIHRDDTFWSAGAC-APSSSKWSKQIHHHFASWAPDTVIHC 604
++G+LFE YLKPYFM A RP+ + D F G A + ++ A DT I C
Sbjct: 136 ISGDLFEPYLKPYFMDALRPVKKGDRFLVRGHMHAVEFKVMDTEPNNEPVIVAGDTEIFC 195
Query: 605 D-GEPIKREEEEEALNAVGYDDIGGCRKQLAQI 700
D G+P+KRE+EE L+ GYDD+GG RKQLAQI
Sbjct: 196 DEGDPVKREDEER-LDGPGYDDVGGVRKQLAQI 227
>09_06_0271 + 21959213-21960559
Length = 448
Score = 29.9 bits (64), Expect = 2.9
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +2
Query: 653 VGYDDIGGCRKQLAQI-XGMGGXATXSXLHXSKAIXGEASXXAFLHVWGXLVPXKHPIAR 829
V YDDIGGC Q ++ + T L + + + LH G L K +A+
Sbjct: 187 VAYDDIGGCEAQKREVREAVELPLTHPELFAAAGV--DPPRGVLLH--GPLGTGKTMLAK 242
Query: 830 AVAXWKXGAFFLFN 871
AVA AFF N
Sbjct: 243 AVARETSAAFFRVN 256
>06_01_0057 - 483710-484309
Length = 199
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 87 YRPRSSVARTDPTVSLSKKQSAMTTQS-WHFHRPKWSNFNSSVVTQSCSR 233
Y P ART P ++ + A S W F WS+ S V+T+ SR
Sbjct: 62 YFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSR 111
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 477 LTVRSIVTTPSGPRGHARRRVQSGRNRSITILHRGLLI 590
+ + +V T GP+G + +GR RS+T+ + G I
Sbjct: 27 MAISDLVKTTLGPKGMDKILQSTGRGRSVTVTNDGATI 64
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 477 LTVRSIVTTPSGPRGHARRRVQSGRNRSITILHRGLLI 590
+ + +V T GP+G + +GR RS+T+ + G I
Sbjct: 26 MAIADLVKTTLGPKGMDKILQSTGRGRSVTVTNDGATI 63
>03_03_0186 +
15243150-15243563,15243685-15243777,15244604-15244666,
15245028-15245114,15245197-15245349,15245422-15245579,
15246458-15246692,15246782-15246892,15246942-15246968,
15247269-15248327,15248432-15248692,15249011-15249196,
15249642-15250793,15250886-15251236,15251343-15251738
Length = 1581
Score = 28.3 bits (60), Expect = 8.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 766 LQXGISPCMGPPGTGKT 816
+Q G++ +GPPGTGKT
Sbjct: 895 IQPGLTMVVGPPGTGKT 911
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,310,951
Number of Sequences: 37544
Number of extensions: 454928
Number of successful extensions: 1270
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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