Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30321.Seq
         (904 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                        101   1e-21
SB_23578| Best HMM Match : RPE65 (HMM E-Value=4.9e-17)                 31   1.7  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score =  101 bits (241), Expect = 1e-21
 Identities = 46/59 (77%), Positives = 56/59 (94%)
 Frame = +2

Query: 80  DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETV 256
           D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KGK+RK+TV
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKGKKRKDTV 63



 Score = 85.0 bits (201), Expect = 7e-17
 Identities = 36/40 (90%), Positives = 39/40 (97%)
 Frame = +2

Query: 581 APDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQI 700
           APDTVIHC+GEP+KREEEEE+LN VGYDDIGGCRKQLAQI
Sbjct: 131 APDTVIHCEGEPVKREEEEESLNEVGYDDIGGCRKQLAQI 170



 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 22/24 (91%), Positives = 24/24 (100%)
 Frame = +1

Query: 508 LVRGGMRAVEFKVVETDPSPFCIV 579
           LVRGGMRAVEFKV+ETDPSP+CIV
Sbjct: 107 LVRGGMRAVEFKVIETDPSPYCIV 130



 Score = 40.7 bits (91), Expect = 0.002
 Identities = 20/36 (55%), Positives = 24/36 (66%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMNRVVXNXLR 330
           L +G+  +   CIVLSDD   D+KIRMNRVV   LR
Sbjct: 53  LIKGKKRKDTVCIVLSDDTISDDKIRMNRVVRMNLR 88


>SB_23578| Best HMM Match : RPE65 (HMM E-Value=4.9e-17)
          Length = 512

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
 Frame = +2

Query: 425 GLTGNLFEVYLKPYFMXAYRPIHRDDTFWSAGACAPSSSKWSKQIH-------HHFASWA 583
           G+T N F +   PYFM   + + ++   W+   C     K   +IH          A++ 
Sbjct: 241 GMTENFFILLENPYFMSVPKVLTKNVFGWAFSKCLYWDPKCQTRIHVMCKKTGEEMATFT 300

Query: 584 PDTVI---HCDGEPIKREEEEEALNAVGYDD 667
            D V    H +    K E  E  ++ VGY D
Sbjct: 301 TDPVFVFHHINAFENKEEIVEIVVDVVGYKD 331


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,272,717
Number of Sequences: 59808
Number of extensions: 494504
Number of successful extensions: 1311
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)