Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30321.Seq
         (904 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF132553-1|AAD27852.1|  801|Drosophila melanogaster BcDNA.GM0288...   252   4e-67
AF047037-1|AAC27447.1|  801|Drosophila melanogaster transitional...   252   4e-67
AE013599-984|AAF58863.1|  801|Drosophila melanogaster CG2331-PA,...   252   4e-67
AF202034-1|AAF17568.1|  799|Drosophila melanogaster endoplasmic ...   240   2e-63
BT010235-1|AAQ23553.1|  424|Drosophila melanogaster RE52890p pro...    30   3.8  
AE014297-3237|AAF56066.1|  424|Drosophila melanogaster CG7023-PB...    30   3.8  
AE014297-3238|AAN13921.1|  364|Drosophila melanogaster CG7023-PA...    29   8.7  

>AF132553-1|AAD27852.1|  801|Drosophila melanogaster BcDNA.GM02885
           protein.
          Length = 801

 Score =  252 bits (618), Expect = 4e-67
 Identities = 150/273 (54%), Positives = 170/273 (62%), Gaps = 2/273 (0%)
 Frame = +2

Query: 59  MADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 238
           MAD+K  +DL+TAIL+RKDRPNRLIVEEA +DDNSVV+LSQAKM++LQLFRGDTV+LKGK
Sbjct: 1   MADSKG-EDLATAILKRKDRPNRLIVEEAQNDDNSVVSLSQAKMDELQLFRGDTVILKGK 59

Query: 239 RRKETVASCSQTIIALMRKFG*TVLXXTNFGXXXPXGEPXVXGPSVKYGKRVHILPIXDS 418
           RRKETV            K     +   N              P VKYGKRV ILPI +S
Sbjct: 60  RRKETVCIVLSDDTCPDEKIRMNRVVRNNLCVHLSDVVSVQSCPDVKYGKRVRILPIDES 119

Query: 419 XEGLTGNLFEVYLKPYFMXAYRPIHRDDTFWSAGACAPSSSKWSKQIHHHFASWAPDTVI 598
            EG+TGNLFE+YLKPYF+ AYRPIH  D F    A  P   K        +   AP+TVI
Sbjct: 120 TEGVTGNLFEIYLKPYFLEAYRPIHMGDNFIVRAAMRPIEFKVVLTDPEPYCIVAPETVI 179

Query: 599 HCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIXGMGGXATXSXLHXS--KAIXGEASX 772
            CDG+PIKREEEEE+LNAVGYDDIGGCRKQLAQI  M         H S  KAI G    
Sbjct: 180 FCDGDPIKREEEEESLNAVGYDDIGGCRKQLAQIKEM---VELPLRHPSLFKAI-GVKPP 235

Query: 773 XAFLHVWGXLVPXKHPIARAVAXWKXGAFFLFN 871
              L ++G     K  IARAVA      FFL N
Sbjct: 236 RGIL-MYGPPGTGKTLIARAVANETGAFFFLIN 267


>AF047037-1|AAC27447.1|  801|Drosophila melanogaster transitional
           endoplasmic reticulumATPase TER94 protein.
          Length = 801

 Score =  252 bits (618), Expect = 4e-67
 Identities = 150/273 (54%), Positives = 170/273 (62%), Gaps = 2/273 (0%)
 Frame = +2

Query: 59  MADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 238
           MAD+K  +DL+TAIL+RKDRPNRLIVEEA +DDNSVV+LSQAKM++LQLFRGDTV+LKGK
Sbjct: 1   MADSKG-EDLATAILKRKDRPNRLIVEEAQNDDNSVVSLSQAKMDELQLFRGDTVILKGK 59

Query: 239 RRKETVASCSQTIIALMRKFG*TVLXXTNFGXXXPXGEPXVXGPSVKYGKRVHILPIXDS 418
           RRKETV            K     +   N              P VKYGKRV ILPI +S
Sbjct: 60  RRKETVCIVLSDDTCPDEKIRMNRVVRNNLCVHLSDVVSVQSCPDVKYGKRVRILPIDES 119

Query: 419 XEGLTGNLFEVYLKPYFMXAYRPIHRDDTFWSAGACAPSSSKWSKQIHHHFASWAPDTVI 598
            EG+TGNLFE+YLKPYF+ AYRPIH  D F    A  P   K        +   AP+TVI
Sbjct: 120 TEGVTGNLFEIYLKPYFLEAYRPIHMGDNFIVRAAMRPIEFKVVLTDPEPYCIVAPETVI 179

Query: 599 HCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIXGMGGXATXSXLHXS--KAIXGEASX 772
            CDG+PIKREEEEE+LNAVGYDDIGGCRKQLAQI  M         H S  KAI G    
Sbjct: 180 FCDGDPIKREEEEESLNAVGYDDIGGCRKQLAQIKEM---VELPLRHPSLFKAI-GVKPP 235

Query: 773 XAFLHVWGXLVPXKHPIARAVAXWKXGAFFLFN 871
              L ++G     K  IARAVA      FFL N
Sbjct: 236 RGIL-MYGPPGTGKTLIARAVANETGAFFFLIN 267


>AE013599-984|AAF58863.1|  801|Drosophila melanogaster CG2331-PA,
           isoform A protein.
          Length = 801

 Score =  252 bits (618), Expect = 4e-67
 Identities = 150/273 (54%), Positives = 170/273 (62%), Gaps = 2/273 (0%)
 Frame = +2

Query: 59  MADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 238
           MAD+K  +DL+TAIL+RKDRPNRLIVEEA +DDNSVV+LSQAKM++LQLFRGDTV+LKGK
Sbjct: 1   MADSKG-EDLATAILKRKDRPNRLIVEEAQNDDNSVVSLSQAKMDELQLFRGDTVILKGK 59

Query: 239 RRKETVASCSQTIIALMRKFG*TVLXXTNFGXXXPXGEPXVXGPSVKYGKRVHILPIXDS 418
           RRKETV            K     +   N              P VKYGKRV ILPI +S
Sbjct: 60  RRKETVCIVLSDDTCPDEKIRMNRVVRNNLCVHLSDVVSVQSCPDVKYGKRVRILPIDES 119

Query: 419 XEGLTGNLFEVYLKPYFMXAYRPIHRDDTFWSAGACAPSSSKWSKQIHHHFASWAPDTVI 598
            EG+TGNLFE+YLKPYF+ AYRPIH  D F    A  P   K        +   AP+TVI
Sbjct: 120 TEGVTGNLFEIYLKPYFLEAYRPIHMGDNFIVRAAMRPIEFKVVLTDPEPYCIVAPETVI 179

Query: 599 HCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIXGMGGXATXSXLHXS--KAIXGEASX 772
            CDG+PIKREEEEE+LNAVGYDDIGGCRKQLAQI  M         H S  KAI G    
Sbjct: 180 FCDGDPIKREEEEESLNAVGYDDIGGCRKQLAQIKEM---VELPLRHPSLFKAI-GVKPP 235

Query: 773 XAFLHVWGXLVPXKHPIARAVAXWKXGAFFLFN 871
              L ++G     K  IARAVA      FFL N
Sbjct: 236 RGIL-MYGPPGTGKTLIARAVANETGAFFFLIN 267


>AF202034-1|AAF17568.1|  799|Drosophila melanogaster endoplasmic
           reticulum membranefusion protein protein.
          Length = 799

 Score =  240 bits (588), Expect = 2e-63
 Identities = 146/273 (53%), Positives = 165/273 (60%), Gaps = 2/273 (0%)
 Frame = +2

Query: 59  MADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 238
           MAD+K  +DL+TAIL+RKDRPNRLIVEEA +DDNSVV+LSQAKM++LQLFRGDTV+LKGK
Sbjct: 1   MADSKG-EDLATAILKRKDRPNRLIVEEAQNDDNSVVSLSQAKMDELQLFRGDTVILKGK 59

Query: 239 RRKETVASCSQTIIALMRKFG*TVLXXTNFGXXXPXGEPXVXGPSVKYGKRVHILPIXDS 418
           RRKETV            K     +   N              P VKYGKRV ILPI +S
Sbjct: 60  RRKETVCIVLSDDTCPDEKIRMNRVVRNNLCVHLSDVVSVQSCPDVKYGKRVRILPIDES 119

Query: 419 XEGLTGNLFEVYLKPYFMXAYRPIHRDDTFWSAGACAPSSSKWSKQIHHHFASWAPDTVI 598
            EG+TGNLFE+YLKPYF      IH  D F    A  P   K        +   AP+TVI
Sbjct: 120 TEGVTGNLFEIYLKPYFPRGLSAIHMGDNFIVRAAMRPIEFKVVLTDPEPYCIVAPETVI 179

Query: 599 HCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIXGMGGXATXSXLHXS--KAIXGEASX 772
            CDG+PIKREEEEE+LNAVGYDDIGGCRKQLAQI  M         H S  KAI G    
Sbjct: 180 FCDGDPIKREEEEESLNAVGYDDIGGCRKQLAQIKEM---VELPLRHPSLFKAI-GVKPP 235

Query: 773 XAFLHVWGXLVPXKHPIARAVAXWKXGAFFLFN 871
              L ++G     K  IARAVA      FFL N
Sbjct: 236 RGIL-MYGPPGTGKTLIARAVANETGAFFFLIN 267


>BT010235-1|AAQ23553.1|  424|Drosophila melanogaster RE52890p
           protein.
          Length = 424

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 169 GTFTGQNGATSTLPW*HSLAQGQTPQGNRCIVLSDDNCPDE 291
           G  TG NGA S   W H + QG      RC+     +  DE
Sbjct: 209 GNGTGTNGANSEPTWVHEIFQGILTSETRCLNCETVSSKDE 249


>AE014297-3237|AAF56066.1|  424|Drosophila melanogaster CG7023-PB,
           isoform B protein.
          Length = 424

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 169 GTFTGQNGATSTLPW*HSLAQGQTPQGNRCIVLSDDNCPDE 291
           G  TG NGA S   W H + QG      RC+     +  DE
Sbjct: 209 GNGTGTNGANSEPTWVHEIFQGILTSETRCLNCETVSSKDE 249


>AE014297-3238|AAN13921.1|  364|Drosophila melanogaster CG7023-PA,
           isoform A protein.
          Length = 364

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +1

Query: 178 TGQNGATSTLPW*HSLAQGQTPQGNRCIVLSDDNCPDE 291
           TG NGA S   W H + QG      RC+     +  DE
Sbjct: 152 TGTNGANSEPTWVHEIFQGILTSETRCLNCETVSSKDE 189


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,844,169
Number of Sequences: 53049
Number of extensions: 738714
Number of successful extensions: 1994
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1974
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4403028645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)