Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30321.Seq
(904 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 213 1e-55
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 213 2e-55
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 213 2e-55
Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical pr... 31 1.1
AC024859-23|ABD63209.1| 299|Caenorhabditis elegans Hypothetical... 29 3.4
AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal tr... 29 6.0
AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical ... 29 6.0
AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation su... 29 6.0
AC024860-3|AAK29985.1| 345|Caenorhabditis elegans Hypothetical ... 29 6.0
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ... 28 7.9
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 213 bits (520), Expect = 1e-55
Identities = 123/267 (46%), Positives = 158/267 (59%)
Frame = +2
Query: 71 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
K D+LSTAIL+ K +PNRLIV+++ DDNSV+A+SQAKM++L LFRGD V+LKGK+RKE
Sbjct: 13 KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKE 72
Query: 251 TVASCSQTIIALMRKFG*TVLXXTNFGXXXPXGEPXVXGPSVKYGKRVHILPIXDSXEGL 430
+VA K + N P++ YG R+H+LPI D+ EGL
Sbjct: 73 SVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVLPIDDTIEGL 132
Query: 431 TGNLFEVYLKPYFMXAYRPIHRDDTFWSAGACAPSSSKWSKQIHHHFASWAPDTVIHCDG 610
TGNLF+V+LKPYF+ AYRP+H+ D F A K + +PDT+IH +G
Sbjct: 133 TGNLFDVFLKPYFLEAYRPLHKGDIFTVQAAMRTVEFKVVETEPAPACIVSPDTMIHYEG 192
Query: 611 EPIKREEEEEALNAVGYDDIGGCRKQLAQIXGMGGXATXSXLHXSKAIXGEASXXAFLHV 790
+PIKREEEEE++N +GYDD+GG RKQLAQI M KAI G L +
Sbjct: 193 DPIKREEEEESMNDIGYDDLGGVRKQLAQIKEMVELPLRHP-QLFKAI-GIKPPRGIL-L 249
Query: 791 WGXLVPXKHPIARAVAXWKXGAFFLFN 871
+G K IARAVA FFL N
Sbjct: 250 FGPPGTGKTLIARAVANETGSFFFLIN 276
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 213 bits (519), Expect = 2e-55
Identities = 126/267 (47%), Positives = 159/267 (59%)
Frame = +2
Query: 71 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
K D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13 KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72
Query: 251 TVASCSQTIIALMRKFG*TVLXXTNFGXXXPXGEPXVXGPSVKYGKRVHILPIXDSXEGL 430
TV+ K + N + ++YGKRVH+LPI D+ EGL
Sbjct: 73 TVSIVLNADNCPNDKIKMNKVVRNNLRSRL-GDVVSISSAQLEYGKRVHVLPIDDTIEGL 131
Query: 431 TGNLFEVYLKPYFMXAYRPIHRDDTFWSAGACAPSSSKWSKQIHHHFASWAPDTVIHCDG 610
TGNLF+V+L+PYF AYRP+H+ D F A K + APDTVIH +G
Sbjct: 132 TGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVETDPAPACIVAPDTVIHYEG 191
Query: 611 EPIKREEEEEALNAVGYDDIGGCRKQLAQIXGMGGXATXSXLHXSKAIXGEASXXAFLHV 790
+PIKREEEEEALN VGYDD+GG RKQLAQI M KAI G L +
Sbjct: 192 DPIKREEEEEALNEVGYDDLGGVRKQLAQIKEMVELPLRHP-QLFKAI-GVKPPRGIL-L 248
Query: 791 WGXLVPXKHPIARAVAXWKXGAFFLFN 871
+G K IARAVA FFL N
Sbjct: 249 FGPPGTGKTLIARAVANETGAFFFLIN 275
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMNRVVXNXLR 330
+ +G+ + IVL+ DNCP++KI+MN+VV N LR
Sbjct: 64 ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLR 99
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 213 bits (519), Expect = 2e-55
Identities = 126/267 (47%), Positives = 159/267 (59%)
Frame = +2
Query: 71 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
K D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13 KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72
Query: 251 TVASCSQTIIALMRKFG*TVLXXTNFGXXXPXGEPXVXGPSVKYGKRVHILPIXDSXEGL 430
TV+ K + N + ++YGKRVH+LPI D+ EGL
Sbjct: 73 TVSIVLNADNCPNDKIKMNKVVRNNLRSRL-GDVVSISSAQLEYGKRVHVLPIDDTIEGL 131
Query: 431 TGNLFEVYLKPYFMXAYRPIHRDDTFWSAGACAPSSSKWSKQIHHHFASWAPDTVIHCDG 610
TGNLF+V+L+PYF AYRP+H+ D F A K + APDTVIH +G
Sbjct: 132 TGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVETDPAPACIVAPDTVIHYEG 191
Query: 611 EPIKREEEEEALNAVGYDDIGGCRKQLAQIXGMGGXATXSXLHXSKAIXGEASXXAFLHV 790
+PIKREEEEEALN VGYDD+GG RKQLAQI M KAI G L +
Sbjct: 192 DPIKREEEEEALNEVGYDDLGGVRKQLAQIKEMVELPLRHP-QLFKAI-GVKPPRGIL-L 248
Query: 791 WGXLVPXKHPIARAVAXWKXGAFFLFN 871
+G K IARAVA FFL N
Sbjct: 249 FGPPGTGKTLIARAVANETGAFFFLIN 275
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMNRVVXNXLR 330
+ +G+ + IVL+ DNCP++KI+MN+VV N LR
Sbjct: 64 ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLR 99
>Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical
protein R08D7.1 protein.
Length = 458
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = -3
Query: 527 RMPPRTRRCRHDGSDGKPP 471
R PPRTRR RHD SD PP
Sbjct: 178 RSPPRTRRDRHD-SDNSPP 195
>AC024859-23|ABD63209.1| 299|Caenorhabditis elegans Hypothetical
protein Y71H2AM.25 protein.
Length = 299
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 539 SKWSKQIHHHFASWAPDTVIHCDGEPIKREEEEEALNAVGY 661
S ++K + S++ +I CD K EE+ A+NAV Y
Sbjct: 117 SMYAKATNGSLLSFSEQQLIDCDDHGFKGCEEQPAINAVSY 157
>AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal
triglyceride transferprotein protein.
Length = 892
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/69 (20%), Positives = 29/69 (42%)
Frame = +2
Query: 371 SVKYGKRVHILPIXDSXEGLTGNLFEVYLKPYFMXAYRPIHRDDTFWSAGACAPSSSKWS 550
+++Y + H+L + S G G + + P + DD + + ++ KW
Sbjct: 351 AIQYPENDHVLSLIASALGGVGTAESITTAREVLLTASPDYLDDLLFGISQSSSNNEKWH 410
Query: 551 KQIHHHFAS 577
KQ+ + S
Sbjct: 411 KQLMYWLGS 419
>AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical
protein Y39F10A.3 protein.
Length = 309
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 85 IIRAFIICHFIQNLLLESKNYYNFY 11
++ AF++C + N+LL SK+ Y FY
Sbjct: 8 LLLAFVVCLTLFNVLLWSKSNYGFY 32
>AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation
suppressor of clk-1protein 4 protein.
Length = 892
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/69 (20%), Positives = 29/69 (42%)
Frame = +2
Query: 371 SVKYGKRVHILPIXDSXEGLTGNLFEVYLKPYFMXAYRPIHRDDTFWSAGACAPSSSKWS 550
+++Y + H+L + S G G + + P + DD + + ++ KW
Sbjct: 351 AIQYPENDHVLSLIASALGGVGTAESITTAREVLLTASPDYLDDLLFGISQSSSNNEKWH 410
Query: 551 KQIHHHFAS 577
KQ+ + S
Sbjct: 411 KQLMYWLGS 419
>AC024860-3|AAK29985.1| 345|Caenorhabditis elegans Hypothetical
protein Y71H2AR.2 protein.
Length = 345
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 539 SKWSKQIHHHFASWAPDTVIHCDGEPIKREEEEEALNAVGY 661
S ++K + S++ +I C+ + K EE+ A+NA+GY
Sbjct: 117 SMYAKATNGTLLSFSEQQLIDCNDQGYKGCEEQFAMNAIGY 157
>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
protein Y80D3A.2 protein.
Length = 1467
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 766 LQXGISPCMGPPGTGKT 816
+Q G++ +GPPGTGKT
Sbjct: 818 MQPGLTMVVGPPGTGKT 834
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,223,861
Number of Sequences: 27780
Number of extensions: 373249
Number of successful extensions: 1019
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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