Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30320.Seq
(534 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 103 2e-23
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 103 2e-23
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 28 0.76
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 27 1.3
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 26 4.1
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 7.1
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.1
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 25 9.4
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 25 9.4
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.4
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 25 9.4
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 9.4
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 103 bits (247), Expect = 2e-23
Identities = 53/86 (61%), Positives = 57/86 (66%)
Frame = +3
Query: 9 MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 189 TGRVYNVTAHASV*LSTSVFAEDYTE 266
TG VYNVT + L V Y E
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYME 86
Score = 95.9 bits (228), Expect = 3e-21
Identities = 49/88 (55%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +2
Query: 215 SCFGVIVNKRVRGRLYRSASISXVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLK 394
S GV++ K V R +EHVKHSKCRQDFL RVK NE KEAKA GKTV L+
Sbjct: 70 SSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLR 129
Query: 395 RQPAPPKAAHIVS-GTEKPVLLAPIPYE 475
RQPAPP AH VS +PV L P+ Y+
Sbjct: 130 RQPAPPATAHFVSTENNEPVTLHPVAYD 157
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 103 bits (247), Expect = 2e-23
Identities = 53/86 (61%), Positives = 57/86 (66%)
Frame = +3
Query: 9 MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 189 TGRVYNVTAHASV*LSTSVFAEDYTE 266
TG VYNVT + L V Y E
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYME 86
Score = 95.5 bits (227), Expect = 4e-21
Identities = 49/88 (55%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +2
Query: 215 SCFGVIVNKRVRGRLYRSASISXVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLK 394
S GV++ K V R +EHVKHSKCRQDFL RVK NE KEAKA GKTV L+
Sbjct: 70 SSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLR 129
Query: 395 RQPAPPKAAHIVS-GTEKPVLLAPIPYE 475
RQPAPP AH VS +PV L P+ Y+
Sbjct: 130 RQPAPPAKAHFVSTENNEPVTLHPVAYD 157
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 28.3 bits (60), Expect = 0.76
Identities = 22/91 (24%), Positives = 40/91 (43%)
Frame = +2
Query: 80 YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCSCFGVIVNKRVRGRL 259
+ L H SW + R+ C +KGY PW R C+ I+N
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW------HRKCAFDAYILN------- 245
Query: 260 YRSASISXVEHVKHSKCRQDFLKRVKENERL 352
Y + S E + +K R++F++ +K ++++
Sbjct: 246 YLTDQ-SDAEKNRVTKIRKEFIEMLKSSDKI 275
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 121 SPTLYTFMYVESGIVPCVRNLRANKSLVPXR*PLEFVIF 5
S L+ F+ + IVPC+ + + ++P R EF+ F
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF 781
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 448 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ 353
GF S+T SF+G W+ L + + G L G LQ
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQ 477
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 305 KCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 400
K DF KR E +R+ +E A KTV L Q
Sbjct: 181 KKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 359 EAKAAGKTVNLKRQPAPPKAAHIVSGT 439
+ KA K + +QP+PP A H + T
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEHFSNET 370
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = -2
Query: 203 VHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSS 75
+ + C V H + T+ V N +H++ ERNS+
Sbjct: 83 IASLCFEDVIDTSHVSIKLTLPKCVLRSKNGLHYYAERERNST 125
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 24.6 bits (51), Expect = 9.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 326 KRVKENERLLK-EAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVL 454
K+ KE + LK E+ T + QP P SGTE V+
Sbjct: 269 KKKKEQKWTLKFESDKGTSTQCITHQPLPGSTPSFASGTENGVI 312
>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 24.6 bits (51), Expect = 9.4
Identities = 16/66 (24%), Positives = 24/66 (36%)
Frame = -2
Query: 227 HRSMSSHVVHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSSMCAEPASEQ 48
H S H+ CLS + L N +AS +Y + H H+ C A
Sbjct: 42 HLMTSQHIFK--CLSSCNYALSILHNICLASFLYLSKCYYHTHILTSVRLDFCKSHAHTY 99
Query: 47 VPGAAA 30
+ A+
Sbjct: 100 IKSKAS 105
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 326 KRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKP 448
K +++ ER+ K + NL+R PPK + +E P
Sbjct: 83 KILRDEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASEVP 123
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 24.6 bits (51), Expect = 9.4
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = -3
Query: 403 WLSLQVDGLAGSLGF 359
WL+++ DG++G +GF
Sbjct: 1085 WLAIRTDGISGLVGF 1099
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,018,352
Number of Sequences: 5004
Number of extensions: 38855
Number of successful extensions: 145
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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