Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30320.Seq
(534 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0290 + 2246791-2247027,2248089-2248346 101 4e-22
10_08_0310 - 16669565-16669822,16670558-16670794 99 2e-21
01_06_1794 - 39919363-39920025 29 1.8
08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230... 29 2.4
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 29 3.1
09_06_0068 - 20661060-20661506,20662702-20662824,20663513-206637... 28 4.1
09_02_0307 + 7131031-7131326,7131414-7131560,7132579-7132711,713... 28 4.1
08_02_0132 + 12908995-12909437,12909727-12910211,12910417-129109... 28 4.1
05_03_0549 - 15349259-15349346,15349466-15349585,15349899-153500... 28 4.1
03_06_0467 + 34145126-34145187,34145403-34145759,34146161-341462... 28 5.4
02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599 28 5.4
02_01_0404 - 2945611-2948802 28 5.4
10_08_0570 + 18851451-18851723,18851894-18851928,18851929-188519... 27 9.5
09_02_0487 + 9828283-9829354,9830436-9830580,9830863-9831153,983... 27 9.5
08_02_0830 - 21617485-21618198 27 9.5
05_07_0305 - 29097478-29097598,29097766-29097866,29098136-290982... 27 9.5
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871... 27 9.5
02_04_0466 - 23149906-23150046,23150129-23150279,23151684-231517... 27 9.5
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 101 bits (242), Expect = 4e-22
Identities = 45/71 (63%), Positives = 53/71 (74%)
Frame = +3
Query: 9 MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
M G R TRDLFAR FR G IPL+TY++ YK+GD VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
Query: 189 TGRVYNVTAHA 221
TGRV+NVT A
Sbjct: 61 TGRVWNVTKRA 71
Score = 64.9 bits (151), Expect = 4e-11
Identities = 33/86 (38%), Positives = 50/86 (58%)
Frame = +2
Query: 224 GVIVNKRVRGRLYRSASISXVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQP 403
GV +NK+V R+ R VEHV+ S+C ++ R +N++L +AKA G+ ++ KRQP
Sbjct: 73 GVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAKARGEVISTKRQP 132
Query: 404 APPKAAHIVSGTEKPVLLAPIPYEFV 481
PK +V G + PIPY+ V
Sbjct: 133 EGPKPGFMVEGATLET-VTPIPYDVV 157
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 99.1 bits (236), Expect = 2e-21
Identities = 44/71 (61%), Positives = 53/71 (74%)
Frame = +3
Query: 9 MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
M G R TRDLFAR FR G IPL+TY++ YK+G+ VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60
Query: 189 TGRVYNVTAHA 221
TGRV+NVT A
Sbjct: 61 TGRVWNVTKRA 71
Score = 67.3 bits (157), Expect = 7e-12
Identities = 34/86 (39%), Positives = 51/86 (59%)
Frame = +2
Query: 224 GVIVNKRVRGRLYRSASISXVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQP 403
GV +NK+V R+ R VEHV+ S+C ++F R +N++L +AKA G+ ++ KRQP
Sbjct: 73 GVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAKARGEVISTKRQP 132
Query: 404 APPKAAHIVSGTEKPVLLAPIPYEFV 481
PK +V G + PIPY+ V
Sbjct: 133 QGPKPGFMVEGATLET-VTPIPYDVV 157
>01_06_1794 - 39919363-39920025
Length = 220
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 329 RVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPI 466
R ++ ++ EA AAG + KRQP PP SG A +
Sbjct: 27 RQQQQQQQQYEAAAAGDKTSAKRQPPPPSRLKKTSGRNDDAATAAV 72
>08_01_0283 -
2304024-2304111,2304224-2304343,2304594-2304715,
2304824-2305096,2305454-2305558,2305635-2305851,
2306012-2306262,2306518-2306724,2307087-2307351,
2308655-2308749
Length = 580
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 116 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCS 217
W H QW YAT+ I W+ R+ V D S
Sbjct: 535 WISIGHSTQWLWYSVYATKQISWRTRALVISDWS 568
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 108 YKVGDIVDIRGNGAVQKGMPHKVY 179
++ GDI+ I G+G+V K PH++Y
Sbjct: 623 FEDGDIIVIWGDGSVSKVGPHEIY 646
>09_06_0068 -
20661060-20661506,20662702-20662824,20663513-20663770,
20665635-20666027
Length = 406
Score = 28.3 bits (60), Expect = 4.1
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +2
Query: 209 DCSCFGVIVNKRVRGRLYRSASISXVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVN 388
D F +I++ R+RG Y + + + S C LK KE + + + V
Sbjct: 320 DSRNFRMIMDPRLRGE-YSVKAARDIAKLAES-C---LLKNAKERPTMSEVVDVLRRAVQ 374
Query: 389 LKRQPAPPKA-AHIVSGTEKPVLLAPIP 469
+ P PP A A SG K V +AP P
Sbjct: 375 SQPDPPPPPAAAAAASGKGKRVDVAPQP 402
>09_02_0307 +
7131031-7131326,7131414-7131560,7132579-7132711,
7133115-7133207,7133421-7133717
Length = 321
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 356 KEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFVA 484
++A AA + L+ + A G E+P L P+PYE+ A
Sbjct: 77 RKAAAAAEADALRSAARQARTASSWYGDERPRWLGPVPYEYPA 119
>08_02_0132 +
12908995-12909437,12909727-12910211,12910417-12910988,
12911080-12911211,12912184-12912939
Length = 795
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +2
Query: 155 KGYATQSIPWKDRSRVQRDCS--CFGVIVNKRVRGRLY 262
KG+ S PW SRV+ S G+I K VR R Y
Sbjct: 149 KGHKAPSRPWTHTSRVKSAASWVILGMIARKPVRRRTY 186
>05_03_0549 -
15349259-15349346,15349466-15349585,15349899-15350020,
15350511-15350783,15351398-15351502,15351588-15351804,
15352031-15352281,15352582-15352776,15352881-15353139,
15354617-15354714
Length = 575
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +2
Query: 116 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRD 211
W H H QW YA++ W+ R V D
Sbjct: 530 WIHVGHSTQWLWYSVYASKQFSWRTRMLVVSD 561
>03_06_0467 +
34145126-34145187,34145403-34145759,34146161-34146248,
34146361-34146506,34146892-34146936,34147030-34147133,
34147225-34147361,34147651-34147761,34148455-34148664
Length = 419
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 363 PRLPARPST*RDSQLPLKLPTSSVELRNPSYLRLSH 470
P L RP R P+ PT + +++ PS+L L H
Sbjct: 347 PNLQERPMDRRPELGPMPFPTQAWQMQAPSHLPLLH 382
>02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599
Length = 99
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 293 VKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 400
++ +KCRQD++ VK++ +L+++ A K KRQ
Sbjct: 1 MRQAKCRQDYMAIVKQSRQLIEKLDA--KNEPKKRQ 34
>02_01_0404 - 2945611-2948802
Length = 1063
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -1
Query: 312 LHXECLTCSTXD-IDALRYNLPRTRLLTITPKHEQSRCT 199
LH C CS ID LR+NL LL ++ S CT
Sbjct: 7 LHSSCKKCSNRCFIDFLRFNLAFALLLLLSLASPTSSCT 45
>10_08_0570 +
18851451-18851723,18851894-18851928,18851929-18851998,
18852089-18852187,18852276-18852365,18852430-18852920,
18853015-18853102,18853204-18853245,18853548-18853574,
18853817-18853996,18854249-18854416,18854501-18854710
Length = 590
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +3
Query: 288 SMSSTXSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRNP 449
S S + D+ LR G R+PRL RP R S P+ LP+ L P
Sbjct: 228 STSELIAGDRI-LRRELVTGGRVRRPRLSRRPRPPRRSSSPVPLPSPHRILHRP 280
>09_02_0487 +
9828283-9829354,9830436-9830580,9830863-9831153,
9831984-9832032
Length = 518
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +2
Query: 332 VKENERLLKEAKAA--GKTVNLKRQPAPPKAAH-IVSGTEKPVLLAP 463
V+ +++ LK +A G N R P PP+A++ I G P+LL+P
Sbjct: 93 VQPSKKFLKSLEACIPGNCTN-GRLPTPPQASNDIEEGANMPLLLSP 138
>08_02_0830 - 21617485-21618198
Length = 237
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 302 SKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAA 421
S CR D ++R N+R L A +A + ++ ++P P K A
Sbjct: 149 SPCRADSVERWDSNKRPLSRASSAERW-DINKKPRPKKDA 187
>05_07_0305 -
29097478-29097598,29097766-29097866,29098136-29098288,
29098404-29098542,29098649-29098719,29099022-29099333,
29099605-29099903,29100011-29100271,29100365-29100471,
29100588-29100739,29100816-29100970,29102946-29103141,
29103340-29103468,29103540-29103641,29103736-29103889,
29103970-29104058
Length = 846
Score = 27.1 bits (57), Expect = 9.5
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Frame = +3
Query: 246 FAEDYTEAHQYPVLSMSSTXSADKTSLRESKRMRGY*RKPRLP------ARP----ST*R 395
+ +D + H+ S+ + T L E+ R +G + P A P ST R
Sbjct: 190 YTQDQNQNHEGRGYSLRHKQTKRTTGLIENPRKQGDDKSPHAEDDEEHKAEPLLQWSTSR 249
Query: 396 DSQLPLKLPTSSVELRNPSYLRL 464
+++LPLK+ S+ + PSY L
Sbjct: 250 ENELPLKVDPSNCKHCTPSYCLL 272
>02_04_0562 -
23886272-23886357,23886456-23886571,23887045-23887127,
23887683-23887829,23887946-23887993,23888166-23888384,
23889370-23889541,23889636-23889700,23890386-23890512,
23891358-23891450,23891520-23891629,23891722-23891868,
23892161-23892473,23892580-23893178
Length = 774
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2
Query: 233 VNKRVRGRLYRSASISXVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 409
V++R R + ++ + K +++ K+ KE + LKE KAA + + LK P
Sbjct: 524 VSERRRKLEFLEMQEELIKEEEKKKEKEEKAKQEKEEKAKLKEPKAAEEDLALKEMTGP 582
>02_04_0466 -
23149906-23150046,23150129-23150279,23151684-23151785,
23151893-23152110,23152203-23152325,23152863-23152991,
23153191-23153274,23154009-23154104,23154735-23154816,
23155047-23155117,23155269-23155363,23156090-23156276,
23156586-23156757,23157800-23157948,23158578-23158701,
23158836-23158991,23159101-23159247,23160470-23160489
Length = 748
Score = 27.1 bits (57), Expect = 9.5
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Frame = +2
Query: 185 KDRSRVQRDCSCFGVIVNKRVRG-----RLYRSASISXVEHVKHSKCRQDFLKRVKENER 349
K S VQRD IV +R+R R E ++ + +Q+ R K +
Sbjct: 205 KHLSMVQRDHEQKSQIVERRIRDDAALEEAKRKEQAMKDEKIRQERAKQEAEARQKAAAK 264
Query: 350 LLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
L EA+ A K KAA VS
Sbjct: 265 LAVEAQKAAAEAAAKEAAEAQKAAAEVS 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,694,419
Number of Sequences: 37544
Number of extensions: 272996
Number of successful extensions: 922
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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