Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30320.Seq
(534 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) 118 3e-27
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.59
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23) 31 0.78
SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6) 29 1.8
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1) 29 3.2
SB_25388| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 27 7.3
SB_42269| Best HMM Match : efhand (HMM E-Value=4.8e-05) 27 7.3
SB_24590| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_32619| Best HMM Match : FCH (HMM E-Value=7.1e-23) 27 9.6
>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 768
Score = 118 bits (284), Expect = 3e-27
Identities = 52/71 (73%), Positives = 60/71 (84%)
Frame = +3
Query: 9 MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
MTN+KGYR GTR +F+++FR G LSTY+K YKVGDIVD++ NGAVQKGMPHKVYHGK
Sbjct: 423 MTNTKGYRRGTRYMFSKKFRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHKVYHGK 482
Query: 189 TGRVYNVTAHA 221
TGRVYNVT A
Sbjct: 483 TGRVYNVTKRA 493
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 31.1 bits (67), Expect = 0.59
Identities = 20/79 (25%), Positives = 40/79 (50%)
Frame = +2
Query: 242 RVRGRLYRSASISXVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAA 421
R RL+R ++ E + K R + ++ + +RLL+++++ K L++ P P A
Sbjct: 1529 RAIARLWRKLTVEQREPYR-LKARDNRVRLKDQEKRLLRQSESEKKHAALEQPPTP--AP 1585
Query: 422 HIVSGTEKPVLLAPIPYEF 478
+ + E P+ A P+ F
Sbjct: 1586 QVETQPETPIHQAASPFVF 1604
>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
Length = 565
Score = 30.7 bits (66), Expect = 0.78
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 320 FLKRVKENERLLKEAKAAGKTVNLKRQPA-PPKAAHIVSGTEKPVLLAPIP 469
F+KR + +R L+E A +NL ++PA P K + EKPV P P
Sbjct: 272 FVKRTQRRQRELEEVADA---INLAKRPAQPEKPLKFLVKVEKPVPRPPTP 319
>SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 23 GLPXRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 145
G+ H G+ R+ TWNYS + + S +W + R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 23 GLPXRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 145
G+ + G++R+ TWNYS + + S +W + R +
Sbjct: 87 GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127
>SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 23 GLPXRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 145
G+ H G+ R+ TWNYS + + S +W + R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 23 GLPXRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 145
G+ + G++R+ TWNYS + + S +W + R +
Sbjct: 87 GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127
>SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)
Length = 305
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 383 VNLKRQPAPPKAAHIVSGTEKPVLLAPIPYE 475
VN + PP A + ++ ++PVL P+P++
Sbjct: 130 VNKSKAETPPPAYYTITSNQEPVLNMPVPWQ 160
>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
Length = 271
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 278 SXVEH-VKHSKCRQDFLKRVKENERLLKEAKAAGKT 382
S ++H ++ K +QDF+ +KE RL +E+++ T
Sbjct: 43 SCIDHKLEERKIKQDFVTLIKERNRLGRESRSGAST 78
>SB_25388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 28.3 bits (60), Expect = 4.2
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = +2
Query: 248 RGRLYRSASISXVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHI 427
R +Y+ A S + SK ++ + + +K+ + ++K+A A G++VN++ P P +
Sbjct: 95 RENMYKKAIDSAEKSGNSSKAKR-YGRGLKQIQDMVKQANA-GESVNMEELPPPVAISAA 152
Query: 428 VSGTEKPVLLAPIP 469
T P P P
Sbjct: 153 AVPTAAPQEATPSP 166
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 160 VCHTKYTMERQVACTT*LLMLRCDCQQA-CSRKIIPKRINIXC*ACQALXVQTRLP 324
V H + V C +++ C C+ A CS +++ + C +C+ R+P
Sbjct: 351 VTHVVLCVPHVVLCVAYAVVVCCSCRVACCSCRVVCCSCRVVCCSCRVAHAVLRVP 406
>SB_42269| Best HMM Match : efhand (HMM E-Value=4.8e-05)
Length = 901
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 242 RVRGRLYRSASISXVEHVKHSKCRQDFLKRVKENERLLKE 361
R+R RL +A + +EHV H K + +R+++ L K+
Sbjct: 643 RMRTRLSNTAFLDPLEHVGHRKLFDNLRQRIQDVTGLQKD 682
>SB_24590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 245 VRGRLYRSASISXVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTV 385
+RG L + H HS CRQ+ + K E + K AK TV
Sbjct: 134 LRGILEMDPENALSHHSNHSFCRQEQHIQKKNTEEIEKAAKNQSNTV 180
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 221 FGVIVNKRVRGRLYRSASISXVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 400
F V++ +RGR+ S+ + +KC + + VK+NE + K + K R+
Sbjct: 2169 FEVVIQASIRGRIIARESLRPLRKDVTAKCVSIWRRYVKKNE-VTKATEGREKEDEANRK 2227
Query: 401 P-APPK 415
+PP+
Sbjct: 2228 SRSPPR 2233
>SB_32619| Best HMM Match : FCH (HMM E-Value=7.1e-23)
Length = 334
Score = 27.1 bits (57), Expect = 9.6
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Frame = +2
Query: 95 VHESVQSWRHCRHQR---QWCSSK----GYATQSIPWKDR-SRVQRDCSCFGVIVNKRVR 250
VHESV +W+ + + W +K G++ PW R V + + R +
Sbjct: 141 VHESVAAWKGANYHKSLLSWKETKNAEEGFSKAQRPWAKRYDDVLKSKKAYYAACRARDQ 200
Query: 251 G-RLYRSASISXVEHVKHSKCRQDFLKRVKE 340
+LY S+ + ++ + K ++ +K +E
Sbjct: 201 AEKLYNSSDPNTIKEDQIKKTKEKLMKSERE 231
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,832,046
Number of Sequences: 59808
Number of extensions: 317307
Number of successful extensions: 1070
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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