Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30320.Seq
(534 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal prote... 101 3e-22
Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical pr... 33 0.098
Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical pr... 33 0.098
Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical pr... 33 0.098
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass... 29 1.6
U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily ass... 29 1.6
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 29 1.6
U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical pr... 29 1.6
AL132853-5|CAB60443.1| 279|Caenorhabditis elegans Hypothetical ... 29 2.1
Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical pr... 29 2.8
AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical... 29 2.8
Z78016-1|CAB01439.1| 276|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z68218-4|CAA92474.1| 329|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 27 6.4
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 27 6.4
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z71178-3|CAA94876.2| 254|Caenorhabditis elegans Hypothetical pr... 27 8.5
>L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 21 protein.
Length = 161
Score = 101 bits (242), Expect = 3e-22
Identities = 47/71 (66%), Positives = 53/71 (74%)
Frame = +3
Query: 9 MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
MTNSKG R GTR +FAR FR HG LSTY YK GD+VDI+ NGA QKGMP K YHG+
Sbjct: 1 MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60
Query: 189 TGRVYNVTAHA 221
TGR++NVT A
Sbjct: 61 TGRIFNVTRGA 71
Score = 85.4 bits (202), Expect = 2e-17
Identities = 44/89 (49%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Frame = +2
Query: 224 GVIVNKRVRGRLYRSASISXVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTV-NLKRQ 400
G+IVNKRVRG + +EH+K SKCR DFL RVK N+ K AK+AG+ V LKR
Sbjct: 73 GIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRL 132
Query: 401 PAPPKAAH-IVSGTEKPVLLAPIPYEFVA 484
P P+ AH + + +P LLAP+ +E VA
Sbjct: 133 PVAPRGAHTVTTQNNEPELLAPLRFEIVA 161
>Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical
protein W06F12.2c protein.
Length = 502
Score = 33.5 bits (73), Expect = 0.098
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3
Query: 193 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 56
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical
protein W06F12.2b protein.
Length = 568
Score = 33.5 bits (73), Expect = 0.098
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3
Query: 193 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 56
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical
protein W06F12.2a protein.
Length = 562
Score = 33.5 bits (73), Expect = 0.098
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3
Query: 193 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 56
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265
>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform e protein.
Length = 2702
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 147 AVQKGMPHKVYHGKT-GRVYNVTAHASV*LSTSVFAEDYTEAHQY 278
A+ G PH + H KT + HA + S +F DYT+++ Y
Sbjct: 2441 ALAIGSPHNIPHFKTLDDIVKAIKHAGLEYSNLIFGIDYTKSNFY 2485
>U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform a protein.
Length = 1633
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 147 AVQKGMPHKVYHGKT-GRVYNVTAHASV*LSTSVFAEDYTEAHQY 278
A+ G PH + H KT + HA + S +F DYT+++ Y
Sbjct: 1372 ALAIGSPHNIPHFKTLDDIVKAIKHAGLEYSNLIFGIDYTKSNFY 1416
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 147 AVQKGMPHKVYHGKT-GRVYNVTAHASV*LSTSVFAEDYTEAHQY 278
A+ G PH + H KT + HA + S +F DYT+++ Y
Sbjct: 7287 ALAIGSPHNIPHFKTLDDIVKAIKHAGLEYSNLIFGIDYTKSNFY 7331
>U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical
protein ZK418.6 protein.
Length = 825
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 386 NLKRQPAPPKAAHIVSGTE 442
NL+R+PAPPK H+ S E
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480
>AL132853-5|CAB60443.1| 279|Caenorhabditis elegans Hypothetical
protein Y80D3A.9 protein.
Length = 279
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 451 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 365
DG LS D+ RG+WL + G G L
Sbjct: 39 DGMLSGVDEKDVARGTWLGMDAHGKVGML 67
>Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical
protein F49E2.5d protein.
Length = 889
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 284 VEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVN-LKRQPAPPKAAHIVSGTEKPVLLA 460
VE+V + K+N++ K++++ T ++ PAPP+ +V EKPV A
Sbjct: 361 VENVVEKSTTPPATENKKKNKKDKKKSESEKVTEQPVESAPAPPQVEQVVEKVEKPV--A 418
Query: 461 PI 466
P+
Sbjct: 419 PV 420
>AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical
protein Y73B6BL.1 protein.
Length = 751
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +2
Query: 110 QSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCSCFG 226
Q RHC Q C S Y W+ RSRV +C G
Sbjct: 366 QPVRHCSEQDATCDSPFYWCDMKLWRCRSRVVYGGNCTG 404
>Z78016-1|CAB01439.1| 276|Caenorhabditis elegans Hypothetical
protein R186.1 protein.
Length = 276
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 451 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 365
DG LS D + RG+WL L +G G +
Sbjct: 39 DGILSGVDKQENARGTWLGLNENGRIGMM 67
>Z68218-4|CAA92474.1| 329|Caenorhabditis elegans Hypothetical
protein K01H12.4 protein.
Length = 329
Score = 28.3 bits (60), Expect = 3.7
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Frame = +2
Query: 236 NKRVRGRLYRSASISXVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPK 415
NK + + +I +E +KH KCR LK+ K ++ K AG T K +P
Sbjct: 154 NKSLYRKHIEKLAIEPLEDIKHLKCRG--LKKSKPDDLFPKATYDAG-TGKPKMALSPSS 210
Query: 416 AAHI----VSGTEKPVLLAPIPYEFVA 484
+ S T K LA P EFV+
Sbjct: 211 MVSVDLSYASTTAKSNSLAYQPMEFVS 237
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 27.5 bits (58), Expect = 6.4
Identities = 17/92 (18%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +2
Query: 200 VQRDCS-CFGVIVN-KRVRGRLYRSASISXVEHVKHSKCRQDFLKRVKENERLLKEAKAA 373
+++ C C +I + K+ + A+ +E + K +++ K+ ++++++ K+ +
Sbjct: 1568 IKKKCGECIDIIRSAKKAQAESAELAAQKLLELIDEEKVQKEVKKQKQKDKKIKKKEEKK 1627
Query: 374 GKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIP 469
K + +P P V E V+ P+P
Sbjct: 1628 IKKQEAEPEPEPEPEPEPVPEPEPVVISEPVP 1659
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 27.5 bits (58), Expect = 6.4
Identities = 17/92 (18%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +2
Query: 200 VQRDCS-CFGVIVN-KRVRGRLYRSASISXVEHVKHSKCRQDFLKRVKENERLLKEAKAA 373
+++ C C +I + K+ + A+ +E + K +++ K+ ++++++ K+ +
Sbjct: 1568 IKKKCGECIDIIRSAKKAQAESAELAAQKLLELIDEEKVQKEVKKQKQKDKKIKKKEEKK 1627
Query: 374 GKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIP 469
K + +P P V E V+ P+P
Sbjct: 1628 IKKQEAEPEPEPEPEPEPVPEPEPVVISEPVP 1659
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
protein R11A8.7d protein.
Length = 1427
Score = 27.5 bits (58), Expect = 6.4
Identities = 17/92 (18%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +2
Query: 200 VQRDCS-CFGVIVN-KRVRGRLYRSASISXVEHVKHSKCRQDFLKRVKENERLLKEAKAA 373
+++ C C +I + K+ + A+ +E + K +++ K+ ++++++ K+ +
Sbjct: 389 IKKKCGECIDIIRSAKKAQAESAELAAQKLLELIDEEKVQKEVKKQKQKDKKIKKKEEKK 448
Query: 374 GKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIP 469
K + +P P V E V+ P+P
Sbjct: 449 IKKQEAEPEPEPEPEPEPVPEPEPVVISEPVP 480
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical
protein R11A8.7c protein.
Length = 1405
Score = 27.5 bits (58), Expect = 6.4
Identities = 17/92 (18%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +2
Query: 200 VQRDCS-CFGVIVN-KRVRGRLYRSASISXVEHVKHSKCRQDFLKRVKENERLLKEAKAA 373
+++ C C +I + K+ + A+ +E + K +++ K+ ++++++ K+ +
Sbjct: 389 IKKKCGECIDIIRSAKKAQAESAELAAQKLLELIDEEKVQKEVKKQKQKDKKIKKKEEKK 448
Query: 374 GKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIP 469
K + +P P V E V+ P+P
Sbjct: 449 IKKQEAEPEPEPEPEPEPVPEPEPVVISEPVP 480
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 27.5 bits (58), Expect = 6.4
Identities = 17/92 (18%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +2
Query: 200 VQRDCS-CFGVIVN-KRVRGRLYRSASISXVEHVKHSKCRQDFLKRVKENERLLKEAKAA 373
+++ C C +I + K+ + A+ +E + K +++ K+ ++++++ K+ +
Sbjct: 1568 IKKKCGECIDIIRSAKKAQAESAELAAQKLLELIDEEKVQKEVKKQKQKDKKIKKKEEKK 1627
Query: 374 GKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIP 469
K + +P P V E V+ P+P
Sbjct: 1628 IKKQEAEPEPEPEPEPEPVPEPEPVVISEPVP 1659
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 27.5 bits (58), Expect = 6.4
Identities = 17/92 (18%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +2
Query: 200 VQRDCS-CFGVIVN-KRVRGRLYRSASISXVEHVKHSKCRQDFLKRVKENERLLKEAKAA 373
+++ C C +I + K+ + A+ +E + K +++ K+ ++++++ K+ +
Sbjct: 1568 IKKKCGECIDIIRSAKKAQAESAELAAQKLLELIDEEKVQKEVKKQKQKDKKIKKKEEKK 1627
Query: 374 GKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIP 469
K + +P P V E V+ P+P
Sbjct: 1628 IKKQEAEPEPEPEPEPEPVPEPEPVVISEPVP 1659
>Z71178-3|CAA94876.2| 254|Caenorhabditis elegans Hypothetical
protein B0024.3 protein.
Length = 254
Score = 27.1 bits (57), Expect = 8.5
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +3
Query: 117 GDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHASV*LSTSVFAEDYTEAHQYPVLSMS 296
G +RG+ G KTG + ++ S +++FA Y+ AH P+ S S
Sbjct: 45 GGASTVRGSSVYSGGFRTGTSGWKTGTSSSSNSYGSNSFRSTIFASLYSHAHS-PIFSHS 103
Query: 297 STXSADKTSL 326
T + +SL
Sbjct: 104 LTNALIISSL 113
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,377,988
Number of Sequences: 27780
Number of extensions: 227172
Number of successful extensions: 855
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -