Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30320.Seq
(534 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60... 100 5e-22
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi... 100 5e-22
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 100 5e-22
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 100 5e-22
At3g09960.1 68416.m01194 calcineurin-like phosphoesterase family... 33 0.12
At4g24350.1 68417.m03494 phosphorylase family protein contains P... 29 1.9
At5g34910.1 68418.m04116 hypothetical protein 28 3.4
At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transfera... 28 3.4
At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative 28 3.4
At5g41220.1 68418.m05009 glutathione S-transferase, putative sim... 27 5.9
At1g04680.1 68414.m00465 pectate lyase family protein similar to... 27 5.9
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 27 7.9
>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
ribosomal protein L21 GI:3885884 from [Oryza sativa]
Length = 164
Score = 100 bits (240), Expect = 5e-22
Identities = 44/71 (61%), Positives = 53/71 (74%)
Frame = +3
Query: 9 MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 189 TGRVYNVTAHA 221
TGR++NVT A
Sbjct: 61 TGRIWNVTKRA 71
Score = 71.7 bits (168), Expect = 3e-13
Identities = 36/86 (41%), Positives = 52/86 (60%)
Frame = +2
Query: 224 GVIVNKRVRGRLYRSASISXVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQP 403
GV VNK++ R+ R VEHV+ S+C ++F R K+N+ L +AKA G+T++ KRQP
Sbjct: 73 GVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQP 132
Query: 404 APPKAAHIVSGTEKPVLLAPIPYEFV 481
PK +V G + PIPY+ V
Sbjct: 133 KGPKPGFMVEGMTLET-VTPIPYDVV 157
>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
[Arabidopsis thaliana]
Length = 164
Score = 100 bits (240), Expect = 5e-22
Identities = 44/71 (61%), Positives = 53/71 (74%)
Frame = +3
Query: 9 MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 189 TGRVYNVTAHA 221
TGR++NVT A
Sbjct: 61 TGRIWNVTKRA 71
Score = 71.7 bits (168), Expect = 3e-13
Identities = 36/86 (41%), Positives = 52/86 (60%)
Frame = +2
Query: 224 GVIVNKRVRGRLYRSASISXVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQP 403
GV VNK++ R+ R VEHV+ S+C ++F R K+N+ L +AKA G+T++ KRQP
Sbjct: 73 GVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQP 132
Query: 404 APPKAAHIVSGTEKPVLLAPIPYEFV 481
PK +V G + PIPY+ V
Sbjct: 133 KGPKPGFMVEGMTLET-VTPIPYDVV 157
>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
to ribosomal protein L21 (gb|L38826). ESTs
gb|AA395597,gb|ATTS5197 come from this gene
Length = 164
Score = 100 bits (240), Expect = 5e-22
Identities = 44/71 (61%), Positives = 53/71 (74%)
Frame = +3
Query: 9 MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 189 TGRVYNVTAHA 221
TGR++NVT A
Sbjct: 61 TGRIWNVTKRA 71
Score = 70.9 bits (166), Expect = 5e-13
Identities = 36/86 (41%), Positives = 51/86 (59%)
Frame = +2
Query: 224 GVIVNKRVRGRLYRSASISXVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQP 403
GV VNK++ R+ R VEHV+ S+C ++F R K+N+ L AKA G+T++ KRQP
Sbjct: 73 GVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQP 132
Query: 404 APPKAAHIVSGTEKPVLLAPIPYEFV 481
PK +V G + PIPY+ V
Sbjct: 133 KGPKPGFMVEGMTLET-VTPIPYDVV 157
>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
to L21 family of ribosomal protein; amino acid sequence
is identical to F21M12.8
Length = 164
Score = 100 bits (240), Expect = 5e-22
Identities = 44/71 (61%), Positives = 53/71 (74%)
Frame = +3
Query: 9 MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 189 TGRVYNVTAHA 221
TGR++NVT A
Sbjct: 61 TGRIWNVTKRA 71
Score = 70.9 bits (166), Expect = 5e-13
Identities = 36/86 (41%), Positives = 51/86 (59%)
Frame = +2
Query: 224 GVIVNKRVRGRLYRSASISXVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQP 403
GV VNK++ R+ R VEHV+ S+C ++F R K+N+ L AKA G+T++ KRQP
Sbjct: 73 GVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQP 132
Query: 404 APPKAAHIVSGTEKPVLLAPIPYEFV 481
PK +V G + PIPY+ V
Sbjct: 133 KGPKPGFMVEGMTLET-VTPIPYDVV 157
>At3g09960.1 68416.m01194 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 311
Score = 33.1 bits (72), Expect = 0.12
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = +2
Query: 101 ESVQSWRHCRHQRQWCSSKGYAT---QSIPWKDRSRVQRDCSCFGVIVNKRVRGRLYRSA 271
E+ + + + W +G+ QS W + RVQ D S +GV+ N G +Y +A
Sbjct: 104 ETWKEYSKSEEREGWYKGEGFENMHLQSRRWAGKIRVQFDYSAYGVLYN----GSIYDAA 159
Query: 272 SISXVEHVKHSKCRQDFLKRVKENER 349
S V H D +K V E+ +
Sbjct: 160 STFESYGVPHGS--SDLIKAVPESHK 183
>At4g24350.1 68417.m03494 phosphorylase family protein contains Pfam
PF01048: Phosphorylase family
Length = 336
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 134 DVYNVSNFVHFHVRGERNSSM 72
DV+NV VHF + G N+SM
Sbjct: 114 DVFNVKGIVHFGIAGNMNNSM 134
>At5g34910.1 68418.m04116 hypothetical protein
Length = 203
Score = 28.3 bits (60), Expect = 3.4
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = +2
Query: 233 VNKRVRGRLYRSASISXVE------HVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLK 394
+NKR R Y S+S S V H+K + + KR +EN + + K V
Sbjct: 80 LNKRRRKESYASSSTSTVAQLQEQLHLKIFELEEQNAKRNEENHQSQSRIASLEKLVLFM 139
Query: 395 RQPAPPKAAHIVSGTEKP 448
++ P AA++ + + +P
Sbjct: 140 KEKDPELAAYLSTDSTEP 157
>At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 450
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 173 FVWHTLLNCTIASDVYNVSNFVHFHVRGERN 81
FVW LLN SDV+ V +H R ERN
Sbjct: 369 FVWDQLLNARFVSDVWMVG--LHLEGRIERN 397
>At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative
Length = 746
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +2
Query: 182 WKDRSRVQRDCSCFGVIVNKRVRGRLYRSASISXVEHVKHSKCRQDFLKRV 334
W + SRV R C C G N R + ++ + H + R +++ R+
Sbjct: 638 WNNDSRVTRACECIGFPANVRNQRHVHTLTQV-YTSHREKWSVRDNYMDRI 687
>At5g41220.1 68418.m05009 glutathione S-transferase, putative
similar to emb|CAA10662
Length = 590
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 68 HTWNYSALHVHESVQSWRHCRHQRQWCS 151
+T NY + E +WR RH ++WCS
Sbjct: 370 YTNNYKSNFTLE--HAWRELRHSKKWCS 395
>At1g04680.1 68414.m00465 pectate lyase family protein similar to
pectate lyase GP:14531296 from [Fragaria x ananassa]
Length = 431
Score = 27.5 bits (58), Expect = 5.9
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 185 SMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNS-SMCAEPASEQVPGAAAVTLGVRH 9
S +F W T+ +D +S F HV + NS S CA+ + V G+ A+T+ H
Sbjct: 216 SETHFGWRTM------ADGDAISIFGSSHVWIDHNSLSHCADGLVDAVMGSTAITISNNH 269
Query: 8 L 6
L
Sbjct: 270 L 270
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 27.1 bits (57), Expect = 7.9
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 113 SWRHCRHQRQWCSS 154
+WR RH ++WCS+
Sbjct: 385 AWRELRHNKKWCST 398
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,729,814
Number of Sequences: 28952
Number of extensions: 211526
Number of successful extensions: 685
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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