Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30319.Seq
         (835 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0440 - 8500068-8501252                                           35   0.092
08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767           30   2.6  
08_01_0091 + 664913-664985,665281-665576,667197-667311,667901-66...    30   2.6  
06_01_1202 + 10389090-10389140,10389218-10389853,10390355-103904...    29   3.5  
11_07_0008 + 27296049-27296395,27296681-27296963,27297575-27297595     29   4.6  
09_02_0273 - 6577272-6577292,6577904-6578186,6578472-6578818           29   4.6  
10_08_0452 - 18038182-18038253,18038338-18038415,18038502-180385...    29   6.0  
01_06_1022 + 33887089-33888411                                         29   6.0  

>03_02_0440 - 8500068-8501252
          Length = 394

 Score = 34.7 bits (76), Expect = 0.092
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 570 SVAVPPRPPREPSXGTARAAFLLTIEANVSSTE-DSGSDKTGVKS 701
           + A  P PPR P+  T  AA  L   +++S+T   SGSD  G +S
Sbjct: 309 TAATAPNPPRRPTGSTTTAAAALVAASSLSATSAPSGSDNPGGES 353


>08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767
          Length = 1041

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 585 PRPPREPSXGTARAAFLLTIEANVS 659
           PRPP EP  G AR A + T++ N S
Sbjct: 557 PRPPVEPKLGVARGAAVPTLKMNPS 581


>08_01_0091 +
           664913-664985,665281-665576,667197-667311,667901-667971
          Length = 184

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +3

Query: 111 QEDHNGEFLRCGSSEQIRSFLGR*DRSS*CVKSA--RAGEGAQKEDQRSRKENKGKPEPK 284
           Q+   G FL  G  E+ RS      +    + SA  R GE A+ +D+ +R   +GK    
Sbjct: 20  QKAEKGNFLEVGEEERSRSEARMGRKRKELLSSAPWRTGEAAEDDDEAARLSREGKVSVT 79

Query: 285 PAKGVTVPT 311
              G T PT
Sbjct: 80  SNPGET-PT 87


>06_01_1202 +
           10389090-10389140,10389218-10389853,10390355-10390439,
           10390536-10390654,10391251-10391318,10391401-10391710
          Length = 422

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQ 335
           G+G  K+D++  K+ K K +P P    T P  K  K  +
Sbjct: 355 GKGKGKKDEKEDKDKKIKRKPSPTVQATTPPAKRRKNNE 393


>11_07_0008 + 27296049-27296395,27296681-27296963,27297575-27297595
          Length = 216

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQ 335
           G+G  K+D++  K+ K K +P P    T P  K  K  +
Sbjct: 148 GKGKGKKDEKEDKDKKIKRKPSPIVQATTPPAKRRKNNE 186


>09_02_0273 - 6577272-6577292,6577904-6578186,6578472-6578818
          Length = 216

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQ 335
           G+G  K+D++  K+ K K +P P    T P  K  K  +
Sbjct: 148 GKGKGKKDEKEDKDKKIKRKPSPIVQATTPPAKRRKNNE 186


>10_08_0452 -
           18038182-18038253,18038338-18038415,18038502-18038579,
           18039112-18039168,18039276-18039349,18039424-18039495,
           18039609-18039670,18039861-18039962,18040378-18040490,
           18040809-18040940,18041156-18041243,18041617-18041711,
           18041793-18042023,18042567-18042680,18042765-18042866,
           18043091-18043207,18043301-18044146
          Length = 810

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +3

Query: 186 RSS*CVKSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKET-QNVKSXXIKS 362
           RSS   KS   GEG + E   +  + + K +P P K  T+  +   K + + V+    +S
Sbjct: 73  RSSSPTKSNSPGEGKRSESVAAGAKPEAKEKPSPKKPKTLGAKSDTKSSAEGVEKEKRRS 132

Query: 363 GEQQKGKGPA 392
               K K  A
Sbjct: 133 PSPTKAKALA 142


>01_06_1022 + 33887089-33888411
          Length = 440

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = -3

Query: 827 PTPASRTFSSVX---SPSEPVLFNSRKSSXNCAPSCGDCAXXLVD*FHTGFVRAGIFGRT 657
           P+ A R +S +     PS+P LF  R +     P     +  L+  FH   +R+ +    
Sbjct: 22  PSSALRLYSLIRIHARPSDPALFAWRPAVLALKPLSAAASLPLLSHFHAHLIRSNLLAYP 81

Query: 656 HV 651
           HV
Sbjct: 82  HV 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,898,706
Number of Sequences: 37544
Number of extensions: 346499
Number of successful extensions: 1089
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)