Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30319.Seq
         (835 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.16 
SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_28488| Best HMM Match : PAX (HMM E-Value=0)                         30   2.7  
SB_3663| Best HMM Match : MBT (HMM E-Value=0)                          30   2.7  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   28   8.1  

>SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +3

Query: 216 AGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNV 341
           A    +KE ++ RK+++GKP+P+  K    PTRK +K  + +
Sbjct: 293 ATSNEKKEQEKERKKSEGKPKPRSEK-EKQPTRKRVKRPEKL 333


>SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 136 YGVGVVNRYALFLDDETDPLDALKAREQ 219
           Y +GV NR+ L L DE DP    K  E+
Sbjct: 6   YSIGVNNRFGLLLSDEEDPETTFKESEK 33


>SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKG 320
           G+ +QK+++  RK N+GKP P  +K + +    G
Sbjct: 46  GKTSQKDEKPERKSNRGKPGPNDSKYIRLAKAGG 79


>SB_28488| Best HMM Match : PAX (HMM E-Value=0)
          Length = 551

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 11/49 (22%), Positives = 27/49 (55%)
 Frame = +3

Query: 234 KEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSXXIKSGEQQKG 380
           K++++  +++KGK + K  K  ++P+R     + ++ S   K   ++ G
Sbjct: 171 KKERKDEEDDKGKEDEKVEKNSSLPSRHNFSSSYSIASILKKPSAEEDG 219


>SB_3663| Best HMM Match : MBT (HMM E-Value=0)
          Length = 327

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 207 SARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPT 311
           SA + +  ++E++   KE + KP+P+P     +PT
Sbjct: 158 SAASSDDEEEEEEEEEKEKEEKPKPEPELAPPLPT 192


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTR-KGIKETQNVKSXXIKSGEQQK 377
           KSA  GEG +   ++ +K N G    K  K +T   + K  +E +  K   I+  +++K
Sbjct: 492 KSATGGEGKEAPAKKKQKHNDGDAPKKSKKKLTHEEKLKLAEEEKEKKKQQIQEDKEKK 550


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,951,000
Number of Sequences: 59808
Number of extensions: 372091
Number of successful extensions: 943
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)