Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30319.Seq
         (835 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein ...    29   0.17 
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    29   0.23 
DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific do...    24   5.0  
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    24   5.0  
AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase ...    24   5.0  

>CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein
           protein.
          Length = 615

 Score = 29.1 bits (62), Expect = 0.17
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +3

Query: 216 AGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRK-GIKETQNVKSXXIKSGEQQKGKG 386
           A EGA K  ++    ++G+P PKP + +T  T++  +K  + V +  ++   QQ G G
Sbjct: 130 AAEGAPKPQRKL--SDRGEPPPKPDRRITTTTQQIVVKLPETVANVSLE--HQQSGAG 183


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 28.7 bits (61), Expect = 0.23
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 410 IXIDRSCRSLTLLLFSTFDVXRLHILSFLNALPGGNGYAFSGL 282
           +   + C  + ++LFST+D   L+   +LN + G NG   S +
Sbjct: 4   VITSKVCALIFIILFSTYDSVVLYPEEYLNIILGPNGTGKSAI 46


>DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 265

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +3

Query: 228 AQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQN 338
           AQ +D++ R  N+G+  P+P   + +P    +K+ ++
Sbjct: 89  AQTQDEQ-RALNEGEVPPEPVANIHIPKLSELKDLKH 124


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +3

Query: 228 AQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQN 338
           AQ +D++ R  N+G+  P+P   + +P    +K+ ++
Sbjct: 89  AQTQDEQ-RALNEGEVPPEPVANIHIPKLSELKDLKH 124


>AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase
           protein.
          Length = 808

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 347 RLHILSFLNALPGGNGYAFSGLGFR 273
           RLH + F++    G GYAF    F+
Sbjct: 775 RLHWVEFMSKFYEGLGYAFKPFSFK 799


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 685,037
Number of Sequences: 2352
Number of extensions: 11494
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 88065063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)