Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30318.Seq
(921 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 120 4e-28
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 42 9e-05
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 41 2e-04
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 36 0.006
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 35 0.019
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 33 0.057
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 33 0.075
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 32 0.100
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 30 0.40
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 29 1.2
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 29 1.2
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 29 1.2
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 28 1.6
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 27 3.7
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 27 4.9
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 27 4.9
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 26 6.5
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 8.6
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 26 8.6
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 8.6
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 26 8.6
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 120 bits (288), Expect = 4e-28
Identities = 64/125 (51%), Positives = 78/125 (62%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
VRG MR VEFKVV+ P F IV+ DT+IH +GEPI RE+EE +L VGYDDIGGCR+Q+
Sbjct: 174 VRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWEGEPINREDEESSLAEVGYDDIGGCRRQM 233
Query: 690 AQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKTXHCSCXLQLXTGAFLLXKLMG 869
AQI+E VELPLRH ++IG+K +G GKT TGAF + G
Sbjct: 234 AQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVAN-ETGAFFFL-ING 291
Query: 870 PGFXS 884
P S
Sbjct: 292 PEIMS 296
Score = 95.9 bits (228), Expect = 7e-21
Identities = 43/100 (43%), Positives = 63/100 (63%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
+ +G+ + IVL+D+ D R+ D+V+I PCP +KY +R+ +L
Sbjct: 78 VVKGKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVL 137
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGA 522
P+ D+VEGLTG+LF+VYLKPYF+EAYRPI + D F G+
Sbjct: 138 PLADTVEGLTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGS 177
Score = 88.6 bits (210), Expect = 1e-18
Identities = 41/68 (60%), Positives = 53/68 (77%)
Frame = +2
Query: 53 NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 232
N D S +D +TAILR+K +PN L+V++A +DDNSV+ LS ME LQLFRGDTV++K
Sbjct: 21 NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVK 80
Query: 233 GKRRKETV 256
GKRRK+TV
Sbjct: 81 GKRRKDTV 88
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 42.3 bits (95), Expect = 9e-05
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKT-------XHC 815
Y+ +GG KQ+ +IKE +ELP++H ++G+ +G GKT H
Sbjct: 144 YEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAHHT 203
Query: 816 SCXLQLXTGAFLLXKLMGPG 875
C +G+ L+ K +G G
Sbjct: 204 DCKFIRVSGSELVQKYIGEG 223
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 41.1 bits (92), Expect = 2e-04
Identities = 25/83 (30%), Positives = 35/83 (42%)
Frame = +3
Query: 603 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXW 782
D +P+ + + Y DIGG Q+ +IKE VELPL H +G+K +
Sbjct: 172 DTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILY 231
Query: 783 GXLVXGKTXHCSCXLQLXTGAFL 851
G GKT + FL
Sbjct: 232 GAPGTGKTLLAKAVANQTSATFL 254
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 36.3 bits (80), Expect = 0.006
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEXVELPL 722
V Y D+GGC++Q+ +++E VELPL
Sbjct: 176 VTYGDVGGCKEQIERLREVVELPL 199
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 34.7 bits (76), Expect = 0.019
Identities = 23/72 (31%), Positives = 31/72 (43%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKTXHCSCXLQLX 836
Y DIGG KQ+ ++ E + LP++ R +GVK +G GKT
Sbjct: 184 YSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARACAAQS 243
Query: 837 TGAFLLXKLMGP 872
FL KL P
Sbjct: 244 NATFL--KLAAP 253
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 33.1 bits (72), Expect = 0.057
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKT 806
V Y D+GG Q +++E VELPL R IG+ +G GKT
Sbjct: 131 VSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKT 182
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 32.7 bits (71), Expect = 0.075
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKT 806
+ + +GG +Q+ +++E +ELPL++ +G+K +G GKT
Sbjct: 129 ISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKT 180
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 32.3 bits (70), Expect = 0.100
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +3
Query: 645 NAVGYDDIGGCRKQLAQIKEXVELPLRH 728
+AV + IGG + Q+AQI++ VELP ++
Sbjct: 274 SAVTFSSIGGLQAQIAQIRDIVELPFQN 301
Score = 29.1 bits (62), Expect = 0.93
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +3
Query: 621 REEEEEALNAVGYDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVK 758
RE E+ N V + DIGG + ++KE VE PL H +GV+
Sbjct: 536 REFMMESPN-VHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVR 580
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 30.3 bits (65), Expect = 0.40
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 548 DHFELDGAHAPAD-LKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTRF 384
DH L +H PA+ LK I A++ G T +PV P+ ++G + TRF
Sbjct: 355 DHCYLQLSHLPAEILKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRF 410
>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -3
Query: 421 QLNHQLAVCGLV---FHISLKDTERWI 350
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -3
Query: 421 QLNHQLAVCGLV---FHISLKDTERWI 350
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 28.7 bits (61), Expect = 1.2
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Frame = +3
Query: 597 HCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEXVELPL------RHLHCSRAIGVK 758
H D + I+ + + ++ IGG + Q+KE V LPL HLH + GV
Sbjct: 351 HIDEKTIRSTDPFANRENLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVL 410
Query: 759 LXGDSHXWGXLVXGKTXHCSCXLQLXTGAFLLXK 860
G G + + +C + +F L K
Sbjct: 411 FHGPP-GTGKTLMARVLAANCSTKNQKISFFLRK 443
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 78 LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 191
L + R + DP ++ + Q + T+SWH FH +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 27.1 bits (57), Expect = 3.7
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 27 FLDSNNKF*IKWQIIKALMIYRPRSSVARTDPTVS--LSKKQSAMTTQSWHFHRPKWSNF 200
F+++N K KW++ A+ P S + + PT+S + + SA TT +RP S
Sbjct: 286 FIEANIK---KWRLAPAVGSLAPPPSYSTSQPTISWDAASESSAGTTTQGDTNRPDKSKN 342
Query: 201 NS 206
S
Sbjct: 343 RS 344
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 576 VAPDTVIHCDGEPIKREEEEEALNAVGYDD 665
V PD + D E I+REEE++A A ++
Sbjct: 200 VMPDLYFYRDPEEIEREEEQKAAAAAAAEE 229
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +3
Query: 618 KREEEEEALNAVGYDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGV 755
K E E + + DIGG + ++ E V +P++H + G+
Sbjct: 160 KAEANREPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGI 205
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/66 (18%), Positives = 29/66 (43%)
Frame = +3
Query: 609 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGX 788
+P + E + V +++IG + +++ + P++ +++G+ WG
Sbjct: 475 QPSSKREGFATVPGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGP 534
Query: 789 LVXGKT 806
GKT
Sbjct: 535 PGCGKT 540
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3
Query: 391 LVFHISLKDTERWI--PHQIDAHEGCFSQHGSSEFSHQG 281
LV + LKD WI H+ + E F G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHR-QSEESLFGDTGDTDFSYQG 472
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 8.6
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 99 SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSRAN 239
SSV S S ++M++ + +F+ S+ +SSV T + S +N
Sbjct: 329 SSVVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSN 375
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 77 PD-DLSTAILRRKDRPNRLIVEEAVSD 154
PD D + + + RK+ PNRL++ A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 8.6
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +2
Query: 50 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 208
L +A N + L+T +RK + N ++ +A ++ N+ +++ A E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEXVELPLRH 728
V +DDIGG + + Q+ + V PL++
Sbjct: 86 VSFDDIGGMDEHVNQLLQDVLFPLKY 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,513,975
Number of Sequences: 5004
Number of extensions: 68972
Number of successful extensions: 204
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -