Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30318.Seq
         (921 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                        135   4e-32
SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)               43   3e-04
SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   5e-04
SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.004
SB_33442| Best HMM Match : AAA (HMM E-Value=0)                         39   0.005
SB_9909| Best HMM Match : AAA (HMM E-Value=0)                          38   0.015
SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)                36   0.061

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score =  135 bits (327), Expect = 4e-32
 Identities = 59/65 (90%), Positives = 64/65 (98%)
 Frame = +3

Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
           VRGGMRAVEFKV+ETDPSP+CIVAPDTVIHC+GEP+KREEEEE+LN VGYDDIGGCRKQL
Sbjct: 108 VRGGMRAVEFKVIETDPSPYCIVAPDTVIHCEGEPVKREEEEESLNEVGYDDIGGCRKQL 167

Query: 690 AQIKE 704
           AQIKE
Sbjct: 168 AQIKE 172



 Score =  101 bits (241), Expect = 1e-21
 Identities = 46/59 (77%), Positives = 56/59 (94%)
 Frame = +2

Query: 80  DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETV 256
           D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KGK+RK+TV
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKGKKRKDTV 63



 Score = 31.9 bits (69), Expect = 0.75
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVV 351
           L +G+  +   CIVLSDD   D+KIRM             DVV
Sbjct: 53  LIKGKKRKDTVCIVLSDDTISDDKIRMNRVVRMNLRVRLGDVV 95


>SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
 Frame = +3

Query: 657 YDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKT-------XHC 815
           Y+ +GG  KQ+ +IKE +ELP++H     A+G+        +G    GKT        H 
Sbjct: 176 YEMVGGLDKQIKEIKEVIELPVKHPELFEALGIDQPKGVLLYGPPGTGKTLLARAVAHHT 235

Query: 816 SCXLQLXTGAFLLXKLMGPG 875
            C     +G+ L+ K +G G
Sbjct: 236 ECTFIRVSGSELVQKFIGEG 255


>SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 27/87 (31%), Positives = 37/87 (42%)
 Frame = +3

Query: 591 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGD 770
           V+  D +P+    + E      Y DIGG   Q+ +IKE VELPL H      +G+K    
Sbjct: 357 VLSDDADPMVTVMKLEKAPQESYADIGGLDTQIQEIKESVELPLTHPELYEEMGIKPPKG 416

Query: 771 SHXWGXLVXGKTXHCSCXLQLXTGAFL 851
              +G    GKT          +  FL
Sbjct: 417 VILYGQPGTGKTLLAKAVANQTSATFL 443


>SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 802

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 24/72 (33%), Positives = 35/72 (48%)
 Frame = +3

Query: 591 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGD 770
           VIH  G  IK++ E  A   V +  IGG + Q+  ++E +E+PL +     A GV     
Sbjct: 235 VIHPFGSVIKKDSE--AKKGVSFQSIGGLKTQIQAVREMIEMPLTNPELFTAYGVPPPRG 292

Query: 771 SHXWGXLVXGKT 806
              +G    GKT
Sbjct: 293 ILLYGPSGTGKT 304



 Score = 29.5 bits (63), Expect = 4.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 651 VGYDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVK 758
           V + D+GG      ++KE VE PL+H    + +G++
Sbjct: 534 VHWSDVGGNEMIKRKLKEAVEWPLKHPEAFQRLGIR 569


>SB_33442| Best HMM Match : AAA (HMM E-Value=0)
          Length = 369

 Score = 39.1 bits (87), Expect = 0.005
 Identities = 26/73 (35%), Positives = 33/73 (45%)
 Frame = +3

Query: 633 EEALNAVGYDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKTXH 812
           EE  N V Y +IGG   Q  +I+E VELPL H    + IG+        +G    GKT  
Sbjct: 156 EEKPN-VSYAEIGGMDIQKQEIREAVELPLTHFELYKQIGIDPPRGVLLYGPPGCGKTML 214

Query: 813 CSCXLQLXTGAFL 851
                   T AF+
Sbjct: 215 AKAVAHHTTAAFI 227


>SB_9909| Best HMM Match : AAA (HMM E-Value=0)
          Length = 400

 Score = 37.5 bits (83), Expect = 0.015
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +3

Query: 651 VGYDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKT 806
           V Y DIGGC++Q+ +++E VE PL H      +G++       +G    GKT
Sbjct: 81  VTYSDIGGCKEQIDKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKT 132


>SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
          Length = 779

 Score = 35.5 bits (78), Expect = 0.061
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +3

Query: 609 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGV 755
           +P+      E    + Y D+GG  +Q+ +++E +ELPL +    + +G+
Sbjct: 118 DPLVYNMSHEDPGNISYSDVGGLSEQIRELREVIELPLTNPELFQRVGI 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,487,241
Number of Sequences: 59808
Number of extensions: 565229
Number of successful extensions: 1341
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2669453024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)