Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30318.Seq
(921 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 140 1e-33
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 140 1e-33
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 131 6e-31
U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical pr... 43 4e-04
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 42 6e-04
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 40 0.003
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 40 0.003
AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome re... 40 0.003
Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical pr... 37 0.018
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 37 0.023
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 37 0.023
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 37 0.023
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 36 0.041
Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical pr... 32 0.66
Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical pr... 32 0.66
Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical pr... 29 6.2
AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical ... 29 6.2
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 140 bits (339), Expect = 1e-33
Identities = 76/125 (60%), Positives = 84/125 (67%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
V+ MR VEFKVVETDP+P CIVAPDTVIH +G+PIKREEEEEALN VGYDD+GG RKQL
Sbjct: 159 VQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALNEVGYDDLGGVRKQL 218
Query: 690 AQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKTXHCSCXLQLXTGAFLLXKLMG 869
AQIKE VELPLRH +AIGVK +G GKT TGAF + G
Sbjct: 219 AQIKEMVELPLRHPQLFKAIGVKPPRGILLFGPPGTGKTLIARAVAN-ETGAFFFL-ING 276
Query: 870 PGFXS 884
P S
Sbjct: 277 PEIMS 281
Score = 105 bits (253), Expect = 3e-23
Identities = 47/95 (49%), Positives = 67/95 (70%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
+ +G+ + IVL+ DNCP++KI+M DVVSI+ ++YGKRVH+L
Sbjct: 64 ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTF 507
PIDD++EGLTGNLF+V+L+PYF +AYRP+H+ D F
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIF 157
Score = 89.0 bits (211), Expect = 4e-18
Identities = 40/63 (63%), Positives = 56/63 (88%)
Frame = +2
Query: 71 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
K D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13 KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72
Query: 251 TVA 259
TV+
Sbjct: 73 TVS 75
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 140 bits (339), Expect = 1e-33
Identities = 76/125 (60%), Positives = 84/125 (67%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
V+ MR VEFKVVETDP+P CIVAPDTVIH +G+PIKREEEEEALN VGYDD+GG RKQL
Sbjct: 159 VQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALNEVGYDDLGGVRKQL 218
Query: 690 AQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKTXHCSCXLQLXTGAFLLXKLMG 869
AQIKE VELPLRH +AIGVK +G GKT TGAF + G
Sbjct: 219 AQIKEMVELPLRHPQLFKAIGVKPPRGILLFGPPGTGKTLIARAVAN-ETGAFFFL-ING 276
Query: 870 PGFXS 884
P S
Sbjct: 277 PEIMS 281
Score = 105 bits (253), Expect = 3e-23
Identities = 47/95 (49%), Positives = 67/95 (70%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
+ +G+ + IVL+ DNCP++KI+M DVVSI+ ++YGKRVH+L
Sbjct: 64 ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTF 507
PIDD++EGLTGNLF+V+L+PYF +AYRP+H+ D F
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIF 157
Score = 89.0 bits (211), Expect = 4e-18
Identities = 40/63 (63%), Positives = 56/63 (88%)
Frame = +2
Query: 71 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
K D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13 KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72
Query: 251 TVA 259
TV+
Sbjct: 73 TVS 75
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 131 bits (317), Expect = 6e-31
Identities = 62/99 (62%), Positives = 76/99 (76%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
V+ MR VEFKVVET+P+P CIV+PDT+IH +G+PIKREEEEE++N +GYDD+GG RKQL
Sbjct: 160 VQAAMRTVEFKVVETEPAPACIVSPDTMIHYEGDPIKREEEEESMNDIGYDDLGGVRKQL 219
Query: 690 AQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKT 806
AQIKE VELPLRH +AIG+K +G GKT
Sbjct: 220 AQIKEMVELPLRHPQLFKAIGIKPPRGILLFGPPGTGKT 258
Score = 118 bits (284), Expect = 6e-27
Identities = 48/95 (50%), Positives = 70/95 (73%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
+ +G+ + + I++SD++CP+EK+RM DVVSI P P++ YG R+H+L
Sbjct: 64 ILKGKKRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVL 123
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTF 507
PIDD++EGLTGNLF+V+LKPYF+EAYRP+H+ D F
Sbjct: 124 PIDDTIEGLTGNLFDVFLKPYFLEAYRPLHKGDIF 158
Score = 90.6 bits (215), Expect = 1e-18
Identities = 42/63 (66%), Positives = 55/63 (87%)
Frame = +2
Query: 71 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
K D+LSTAIL+ K +PNRLIV+++ DDNSV+A+SQAKM++L LFRGD V+LKGK+RKE
Sbjct: 13 KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKE 72
Query: 251 TVA 259
+VA
Sbjct: 73 SVA 75
>U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical
protein C10G11.8 protein.
Length = 438
Score = 42.7 bits (96), Expect = 4e-04
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKT 806
+DDIGGC Q+ ++KE VELPL H +G+ +G GKT
Sbjct: 182 FDDIGGCESQIQELKESVELPLTHPEYYEEMGITAPKGVILYGEPGTGKT 231
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 41.9 bits (94), Expect = 6e-04
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKT-------XHC 815
Y+ +GG KQ+ +IKE +ELP++H A+G+ +G GKT H
Sbjct: 158 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLFGPPGTGKTLLARAVAHHT 217
Query: 816 SCXLQLXTGAFLLXKLMGPG 875
C +G+ L+ K +G G
Sbjct: 218 ECTFIRVSGSELVQKFIGEG 237
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 39.9 bits (89), Expect = 0.003
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKT-------XHC 815
Y+ +GG Q+ +IKE +ELP++H A+G+ +G GKT H
Sbjct: 153 YEMVGGLDTQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 212
Query: 816 SCXLQLXTGAFLLXKLMGPG 875
C +G+ L+ K +G G
Sbjct: 213 ECTFIRVSGSELVQKFIGEG 232
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 39.9 bits (89), Expect = 0.003
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKT-------XHC 815
Y+ +GG Q+ +IKE +ELP++H A+G+ +G GKT H
Sbjct: 174 YEMVGGLDTQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 233
Query: 816 SCXLQLXTGAFLLXKLMGPG 875
C +G+ L+ K +G G
Sbjct: 234 ECTFIRVSGSELVQKFIGEG 253
>AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 2 protein.
Length = 443
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/87 (28%), Positives = 38/87 (43%)
Frame = +3
Query: 591 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGD 770
V+ D +P+ + E Y D+GG +Q+ +IKE VELPL H +G++
Sbjct: 165 VLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKG 224
Query: 771 SHXWGXLVXGKTXHCSCXLQLXTGAFL 851
+G GKT + FL
Sbjct: 225 VILYGCPGTGKTLLAKAVANQTSATFL 251
>Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical
protein C52E4.4 protein.
Length = 435
Score = 37.1 bits (82), Expect = 0.018
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKT 806
V Y D+GGC+ Q+ +++E VE PL H +G++ +G GKT
Sbjct: 174 VTYSDVGGCKDQIEKLREVVETPLLHPERYVNLGIEPPKGVLLYGPPGTGKT 225
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 36.7 bits (81), Expect = 0.023
Identities = 24/72 (33%), Positives = 31/72 (43%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKTXHCSCXLQLX 836
Y DIGGC KQ+ ++ E V LP+ H +G+ +G GKT
Sbjct: 176 YSDIGGCDKQIQELIEAVVLPMTHKDRFVNLGIHPPKGVLMYGPPGTGKTMMARAVAAQT 235
Query: 837 TGAFLLXKLMGP 872
FL KL GP
Sbjct: 236 KSTFL--KLAGP 245
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 36.7 bits (81), Expect = 0.023
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +3
Query: 609 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGX 788
+P+ + E + Y D+GG +Q+ +++E VELPL + + +G+ +G
Sbjct: 125 DPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGP 184
Query: 789 LVXGKT 806
GKT
Sbjct: 185 PGTGKT 190
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 36.7 bits (81), Expect = 0.023
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +3
Query: 609 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGX 788
+P+ + E + Y D+GG +Q+ +++E VELPL + + +G+ +G
Sbjct: 133 DPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGP 192
Query: 789 LVXGKT 806
GKT
Sbjct: 193 PGTGKT 198
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 35.9 bits (79), Expect = 0.041
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKT 806
+ Y DIGG Q +++E VELPL H + IG+ +G GKT
Sbjct: 158 ISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKT 209
>Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical
protein K04D7.2b protein.
Length = 339
Score = 31.9 bits (69), Expect = 0.66
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEXVELPLR 725
+D+IGGC + +A++K+ + LPLR
Sbjct: 79 WDEIGGCEELVAELKDRIILPLR 101
>Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical
protein K04D7.2a protein.
Length = 342
Score = 31.9 bits (69), Expect = 0.66
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEXVELPLR 725
+D+IGGC + +A++K+ + LPLR
Sbjct: 82 WDEIGGCEELVAELKDRIILPLR 104
>Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical
protein ZK20.3 protein.
Length = 372
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 552 TDPSPFCIVAPDTVIHCDGEPIKREEEEE--ALNAVGYD 662
++P+P VAP+ + E + E+EE A+ +GYD
Sbjct: 153 SNPAPAADVAPEAAAPAEAEALTDEQEENVLAITGMGYD 191
>AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical
protein Y39F10A.3 protein.
Length = 309
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 85 IIRAFIICHFIQNLLLESKNYYNFY 11
++ AF++C + N+LL SK+ Y FY
Sbjct: 8 LLLAFVVCLTLFNVLLWSKSNYGFY 32
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,080,901
Number of Sequences: 27780
Number of extensions: 418758
Number of successful extensions: 1014
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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