Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30318.Seq
(921 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 130 1e-30
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 130 1e-30
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 130 1e-30
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 44 1e-04
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 42 4e-04
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 42 4e-04
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 42 8e-04
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 42 8e-04
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 39 0.004
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 39 0.005
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 38 0.009
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 38 0.012
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 32 0.47
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 32 0.47
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak... 31 1.4
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi... 28 7.6
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 130 bits (315), Expect = 1e-30
Identities = 68/125 (54%), Positives = 84/125 (67%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
VRGGMR+VEFKV+ETDP+ +C+VAPDT I C+GEP+KRE+EE L+ VGYDD+GG RKQ+
Sbjct: 158 VRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEER-LDEVGYDDVGGVRKQM 216
Query: 690 AQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKTXHCSCXLQLXTGAFLLXKLMG 869
AQI+E VELPLRH ++IGVK +G GKT TGAF + G
Sbjct: 217 AQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN-ETGAFFFC-ING 274
Query: 870 PGFXS 884
P S
Sbjct: 275 PEIMS 279
Score = 117 bits (282), Expect = 1e-26
Identities = 51/99 (51%), Positives = 66/99 (66%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CI L+D+ C + KIRM DV+S+ CP VKYGKRVHIL
Sbjct: 62 LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAG 519
P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + D F G
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRG 160
Score = 93.9 bits (223), Expect = 1e-19
Identities = 42/65 (64%), Positives = 55/65 (84%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
+D+K+ D STAIL RK PNRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK+
Sbjct: 8 SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKK 67
Query: 242 RKETV 256
RK+TV
Sbjct: 68 RKDTV 72
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 130 bits (315), Expect = 1e-30
Identities = 68/125 (54%), Positives = 84/125 (67%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
VRGGMR++EFKV+ETDP+ +C+VAPDT I C+GEPIKRE+EE L+ VGYDD+GG RKQ+
Sbjct: 159 VRGGMRSIEFKVIETDPAEYCVVAPDTEIFCEGEPIKREDEER-LDEVGYDDVGGVRKQM 217
Query: 690 AQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKTXHCSCXLQLXTGAFLLXKLMG 869
AQI+E VELPLRH ++IGVK +G GKT TGAF + G
Sbjct: 218 AQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN-ETGAFFFC-ING 275
Query: 870 PGFXS 884
P S
Sbjct: 276 PEIMS 280
Score = 112 bits (269), Expect = 4e-25
Identities = 47/99 (47%), Positives = 65/99 (65%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CI L+D+ C + KIRM DV+S+ CP VKYG RVHIL
Sbjct: 63 LIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHIL 122
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAG 519
P+DD++EG++GN+F+ YLKPYF+EAYRP+ + D F G
Sbjct: 123 PLDDTIEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRG 161
Score = 84.2 bits (199), Expect = 1e-16
Identities = 40/66 (60%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Frame = +2
Query: 62 ADNK-SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 238
+D+K + D STAIL +K NRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK
Sbjct: 8 SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGK 67
Query: 239 RRKETV 256
+RK+TV
Sbjct: 68 KRKDTV 73
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 130 bits (314), Expect = 1e-30
Identities = 68/125 (54%), Positives = 84/125 (67%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
VRGGMR+VEFKV+ETDP+ +C+VAPDT I C+GEP+KRE+EE L+ VGYDD+GG RKQ+
Sbjct: 158 VRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEER-LDDVGYDDVGGVRKQM 216
Query: 690 AQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKTXHCSCXLQLXTGAFLLXKLMG 869
AQI+E VELPLRH ++IGVK +G GKT TGAF + G
Sbjct: 217 AQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN-ETGAFFFC-ING 274
Query: 870 PGFXS 884
P S
Sbjct: 275 PEIMS 279
Score = 117 bits (282), Expect = 1e-26
Identities = 51/99 (51%), Positives = 66/99 (66%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CI L+D+ C + KIRM DV+S+ CP VKYGKRVHIL
Sbjct: 62 LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAG 519
P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + D F G
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRG 160
Score = 96.7 bits (230), Expect = 2e-20
Identities = 44/65 (67%), Positives = 56/65 (86%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
+D+KS D STAIL RK PNRL+V+EA++DDNSVV+L A ME+LQLFRGDT+L+KGK+
Sbjct: 8 SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKK 67
Query: 242 RKETV 256
RK+TV
Sbjct: 68 RKDTV 72
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 44.4 bits (100), Expect = 1e-04
Identities = 25/67 (37%), Positives = 32/67 (47%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKTXHCSCXLQ 830
V Y+DIGGC Q +I+E VELPL H + IG+ +G GKT
Sbjct: 152 VSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN 211
Query: 831 LXTGAFL 851
T AF+
Sbjct: 212 HTTAAFI 218
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 42.3 bits (95), Expect = 4e-04
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKT-------XHC 815
YD IGG +Q+ +IKE +ELP++H ++G+ +G GKT H
Sbjct: 160 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 219
Query: 816 SCXLQLXTGAFLLXKLMGPG 875
C +G+ L+ K +G G
Sbjct: 220 DCTFIRVSGSELVQKYIGEG 239
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 42.3 bits (95), Expect = 4e-04
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKT-------XHC 815
YD IGG +Q+ +IKE +ELP++H ++G+ +G GKT H
Sbjct: 160 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 219
Query: 816 SCXLQLXTGAFLLXKLMGPG 875
C +G+ L+ K +G G
Sbjct: 220 DCTFIRVSGSELVQKYIGEG 239
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 41.5 bits (93), Expect = 8e-04
Identities = 26/87 (29%), Positives = 37/87 (42%)
Frame = +3
Query: 591 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGD 770
++ + +P+ + E Y DIGG Q+ +IKE VELPL H IG+K
Sbjct: 165 ILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKG 224
Query: 771 SHXWGXLVXGKTXHCSCXLQLXTGAFL 851
+G GKT + FL
Sbjct: 225 VILYGEPGTGKTLLAKAVANSTSATFL 251
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 41.5 bits (93), Expect = 8e-04
Identities = 26/87 (29%), Positives = 37/87 (42%)
Frame = +3
Query: 591 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGD 770
++ + +P+ + E Y DIGG Q+ +IKE VELPL H IG+K
Sbjct: 165 ILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKG 224
Query: 771 SHXWGXLVXGKTXHCSCXLQLXTGAFL 851
+G GKT + FL
Sbjct: 225 VILYGEPGTGKTLLAKAVANSTSATFL 251
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKT 806
Y DIGGC++Q+ +I+E VELP+ H +G+ +G GKT
Sbjct: 204 YSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKT 253
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKT 806
V Y+D+GGC++Q+ +++E VELP+ H +G+ +G GKT
Sbjct: 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKT 216
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 37.9 bits (84), Expect = 0.009
Identities = 23/72 (31%), Positives = 32/72 (44%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKTXHCSCXLQLX 836
Y+DIGG KQ+ ++ E + LP+ H +GV+ +G GKT
Sbjct: 170 YNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQT 229
Query: 837 TGAFLLXKLMGP 872
FL KL GP
Sbjct: 230 NATFL--KLAGP 239
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 37.5 bits (83), Expect = 0.012
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGXLVXGKTXHCSCXLQLX 836
Y+DIGG KQ+ ++ E + LP+ H +G++ +G GKT
Sbjct: 169 YNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQT 228
Query: 837 TGAFLLXKLMGP 872
FL KL GP
Sbjct: 229 NATFL--KLAGP 238
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 32.3 bits (70), Expect = 0.47
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +3
Query: 609 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGX 788
+P+ E + Y +GG Q+ +++E +ELPL + +G+K +G
Sbjct: 122 DPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGP 181
Query: 789 LVXGKT 806
GKT
Sbjct: 182 PGTGKT 187
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 32.3 bits (70), Expect = 0.47
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +3
Query: 609 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEXVELPLRHLHCSRAIGVKLXGDSHXWGX 788
+P+ E + Y +GG Q+ +++E +ELPL + +G+K +G
Sbjct: 122 DPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGP 181
Query: 789 LVXGKT 806
GKT
Sbjct: 182 PGTGKT 187
>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
similarity to Pfam domain PF01612: 3'-5' exonuclease
Length = 263
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -3
Query: 214 TTEELKLLHFGL*KCHD*VVIAD 146
TTEELK+ H+ L KC D +V+A+
Sbjct: 3 TTEELKISHYKLYKCFDFLVVAN 25
>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 455
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 369 RTRSDGYHIR*THTKVVSHNTVHPNFLIRAII 274
RT S+ ++ HTK++ HN + L+R +I
Sbjct: 28 RTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLI 59
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,009,257
Number of Sequences: 28952
Number of extensions: 387212
Number of successful extensions: 1040
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2188225800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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