Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30316.Seq
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.2  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    26   4.2  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   7.4  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    25   7.4  

>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 460 WGRXAVKHXIGXLKGAP 510
           WGR   +H +G L+G P
Sbjct: 228 WGRAIARHFVGQLRGGP 244


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 61  FTTCVTGKTLVVTQLNRLAAHPPFASWRNSXEART 165
           FT+CVT KT++ + L +  +H    +W+ S  +++
Sbjct: 206 FTSCVTPKTILESPLRKQGSH----NWKTSTNSQS 236


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
            factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 190  TCHGEWQIVSVNILXKFALNFXKSAHFLTNRXK 288
            TC  +WQ  S +    FALN   S  F T+  K
Sbjct: 1030 TCLDQWQTFSDDTDSGFALNLYSSEDFRTDPYK 1062


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 122 IPLSPAGVIAKRPAPIALPNSCAPVMAN 205
           +P  P G++   P+P A     APVM N
Sbjct: 289 VPPPPPGMVMASPSPAAATIPGAPVMPN 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,057,515
Number of Sequences: 5004
Number of extensions: 32635
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)