Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30316.Seq
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81484-2|CAB03970.2|  334|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical ...    28   6.8  
AB275891-1|BAF34314.1|  334|Caenorhabditis elegans D-aspartate o...    28   6.8  

>Z81484-2|CAB03970.2|  334|Caenorhabditis elegans Hypothetical
           protein C47A10.5 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 12  YPIRPIVSRITIHWXSFYNVRDW 80
           YPIR +V  +  HW   +N +D+
Sbjct: 196 YPIRGVVLDVEAHWHKHFNYKDF 218


>AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical
           protein Y47D3B.6 protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 122 IPLSPAGVIAKRPAPIALPNS-CAP 193
           IP++PA V+A R  P ALP S C P
Sbjct: 145 IPVAPAPVVAGRLIPQALPGSPCEP 169


>AB275891-1|BAF34314.1|  334|Caenorhabditis elegans D-aspartate
           oxidase protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 12  YPIRPIVSRITIHWXSFYNVRDW 80
           YPIR +V  +  HW   +N +D+
Sbjct: 196 YPIRGVVLDVEAHWHKHFNYKDF 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,679,997
Number of Sequences: 27780
Number of extensions: 193984
Number of successful extensions: 343
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)