Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30315.Seq
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 68 1e-12
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni... 31 0.19
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.8
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe... 28 1.8
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac... 27 3.1
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 27 4.1
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 26 5.5
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 7.2
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 26 7.2
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 25 9.6
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 68.1 bits (159), Expect = 1e-12
Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Frame = +1
Query: 325 RIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTS 504
++R +L GTVCILLAGR GKRVV++ L L+VTGP+ N P+RR+ RYVI TS
Sbjct: 47 KLRASLAPGTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATS 105
Query: 505 T-KFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIQKTV 681
K + + + + +++ RS V+ + + P+ ++ QK V
Sbjct: 106 APKIDVSGVSVEKFTKAYFAKQKRSGP-VKKDEAFFAENAPKNALPAERIAD----QKAV 160
Query: 682 DXAVIKAIGARPDKK 726
D ++ AI A P+ K
Sbjct: 161 DAKLLPAIKAIPNMK 175
>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 200
Score = 31.1 bits (67), Expect = 0.19
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -1
Query: 407 PTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIFS 273
P S+ + P LP+RR +T I L ++ CLL P +R FS
Sbjct: 21 PESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.9 bits (59), Expect = 1.8
Identities = 21/60 (35%), Positives = 33/60 (55%)
Frame = +1
Query: 490 VIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 669
V+ TST S+T+ NTS ITS + ++S +++ V TS P + L+S+ PI
Sbjct: 2357 VVNTSTPITSSTA--LNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV--LNSSTPI 2412
Score = 27.1 bits (57), Expect = 3.1
Identities = 24/79 (30%), Positives = 39/79 (49%)
Frame = +1
Query: 433 VTGPFAFNSCPLRRIPQRYVIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVM 612
+T A N+ P I V+ +ST S+T NTS ITS + ++S +++ +
Sbjct: 1644 ITSSTALNTSP--PITSSTVVNSSTPITSST--VVNTSTPITSSTVVNSSTPITSSTALN 1699
Query: 613 TSLPQKKRNTFHLSSAKPI 669
TS P + L+S+ PI
Sbjct: 1700 TSTPITSSSV--LNSSTPI 1716
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +1
Query: 490 VIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSA 660
V+ +ST S+T+ NTS ITS + ++S +++ + TS P + + S+A
Sbjct: 3293 VVNSSTPITSSTT--LNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTA 3347
Score = 26.2 bits (55), Expect = 5.5
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +1
Query: 490 VIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLP 624
V+ TST S+T+ NTS ITS + ++S +++ V TS P
Sbjct: 1121 VVNTSTPITSSTA--LNTSTPITSSSVLNSSTPITSSTVVNTSTP 1163
Score = 26.2 bits (55), Expect = 5.5
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +1
Query: 490 VIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLP 624
V+ TST S+T+ NTS ITS + ++S +++ V TS P
Sbjct: 2765 VVNTSTPITSSTA--LNTSTPITSSSVLNSSTPITSSTVVNTSTP 2807
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +1
Query: 490 VIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 669
V+ +ST S+T+ NTS ITS + ++S +++ V TS P + L+S+ PI
Sbjct: 521 VLNSSTPITSSTA--LNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV--LNSSTPI 576
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +1
Query: 490 VIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 669
V+ +ST S+T+ NTS ITS + ++S +++ + TS P + L+S+ PI
Sbjct: 677 VLNSSTPITSSTA--LNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSV--LNSSTPI 732
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +1
Query: 490 VIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 669
V+ +ST S+T+ NTS ITS + ++S +++ V TS P + L+S+ PI
Sbjct: 1289 VLNSSTPITSSTA--LNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV--LNSSTPI 1344
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +1
Query: 490 VIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 669
V+ +ST S+T+ NTS ITS + ++S +++ V TS P + L+S+ PI
Sbjct: 2297 VVNSSTPITSSTA--LNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSSV--LNSSTPI 2352
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +1
Query: 490 VIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 669
V+ +ST S+T+ NTS ITS + ++S +++ V TS P + L+S+ PI
Sbjct: 2633 VLNSSTPITSSTA--LNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV--LNSSTPI 2688
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +1
Query: 490 VIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 669
V+ +ST S+T+ NTS ITS + ++S +++ V TS P + L+S+ PI
Sbjct: 2705 VVNSSTPITSSTA--LNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSSV--LNSSTPI 2760
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +1
Query: 490 VIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 669
V+ +ST S+T+ NTS ITS + ++S +++ V TS P + L+S+ PI
Sbjct: 2861 VLNSSTPITSSTA--LNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV--LNSSTPI 2916
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +1
Query: 490 VIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 669
V+ +ST S+T+ NTS ITS + ++S +++ V TS P + L+S+ PI
Sbjct: 2957 VLNSSTPITSSTA--LNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV--LNSSTPI 3012
Score = 25.4 bits (53), Expect = 9.6
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +1
Query: 490 VIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSA 660
V+ +ST S+T+ NTS ITS + ++S +++ + TS P + + S+A
Sbjct: 653 VLNSSTPITSSTA--LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTA 707
Score = 25.4 bits (53), Expect = 9.6
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +1
Query: 490 VIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 669
V+ +ST S+T+ NTS ITS + ++S +++ + TS P + L+S+ PI
Sbjct: 1577 VVNSSTPITSSTA--LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSV--LNSSTPI 1632
Score = 25.4 bits (53), Expect = 9.6
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +1
Query: 490 VIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 669
V+ +ST S+T+ NTS ITS + ++S +++ + TS P + L+S+ PI
Sbjct: 1745 VVNSSTPITSSTA--LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSV--LNSSTPI 1800
Score = 25.4 bits (53), Expect = 9.6
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +1
Query: 490 VIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 669
V+ +ST S+T+ NTS ITS + ++S +++ + TS P + L+S+ PI
Sbjct: 1841 VVNSSTPITSSTA--LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSV--LNSSTPI 1896
Score = 25.4 bits (53), Expect = 9.6
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +1
Query: 490 VIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 669
V+ +ST S+T+ NTS ITS + ++S +++ + TS P + L+S+ PI
Sbjct: 2033 VVNSSTPITSSTA--LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSV--LNSSTPI 2088
Score = 25.4 bits (53), Expect = 9.6
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +1
Query: 490 VIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSA 660
V+ +ST S+T+ NTS ITS + ++S +++ V +S P + + S+A
Sbjct: 3065 VLNSSTPITSSTA--LNTSTPITSSSVLNSSTAITSSSIVNSSTPITSSSVLNSSTA 3119
Score = 25.4 bits (53), Expect = 9.6
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +1
Query: 490 VIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 669
V+ +ST S+T+ NTS ITS + ++S +++ V +S P + L+S+ PI
Sbjct: 3149 VVNSSTPITSSTT--LNTSTPITSSSVLNSSTAITSSSIVNSSTPITSSSV--LNSSTPI 3204
>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +1
Query: 535 QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIQ 672
+NTS +T IRS SN + K + T LP+ K+N F S+++P++
Sbjct: 180 ENTSGDLT---IRSDSNY--SIKSLTTWLPKWKKNDFKTSNSQPVK 220
>SPBC1734.09 |||NST UDP-N-acetylglucosamine
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 535 GSLKLPSEIWWRCRSHSAEEYGVAGTN 455
G L LPS +W+ C + A+ + V G N
Sbjct: 222 GFLNLPSGVWYLCFNTLAQYFCVRGVN 248
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 411 SAQRSAFSYWTFCIQFVPATPYSSALCD-RHLHQISLGNFKLP 536
S+Q +F C++ +TPY S + RHL Q+S +KLP
Sbjct: 336 SSQNDSFDDVVACLR-QKSTPYLSFIKKARHLIQVSRDKYKLP 377
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 5.5
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +1
Query: 325 RIRPNLKIGTVCILLAGRHAG-KRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGT 501
RI P G + L+ + K++ +VG LPS T P S P R + G+
Sbjct: 246 RITPTKSSGVNLMPLSNAPSPPKQMNVVGSLPSSSN--TSPNHLASVPNRGLTSNSSTGS 303
Query: 502 STKFHSATSNCQNTSMMITSRRIRSASN 585
TK+ + +SN ++ + + + S SN
Sbjct: 304 FTKYTNGSSNSLYSNSSMQTPYLPSKSN 331
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 147 PMNLYLAFLWNILDLEKRSHSVAQI 73
P+ L F+WN L+L +HSV I
Sbjct: 1268 PVLYTLDFIWNTLELNGLNHSVKDI 1292
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 441 TFCIQFVPATPYSSALCDRHLHQISLGNFKLPKH 542
TF P TP+ + L +R L + L PKH
Sbjct: 460 TFVADIPPKTPWGTTLINRKLREEVLREVFAPKH 493
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 200 QIGGEKNGGTRTVPLKRRSPSTPLRRKSVPHLVAVHSAS 316
Q+ +N T PL +P PL +VP A HS+S
Sbjct: 249 QVSNNQNANNST-PLSFHAPIPPLHVPAVPLTSASHSSS 286
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,300,244
Number of Sequences: 5004
Number of extensions: 65876
Number of successful extensions: 227
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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