Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30315.Seq
         (806 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...    89   4e-18
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    85   8e-17
02_02_0470 - 10700092-10700505                                         30   2.5  
05_04_0389 - 20845490-20845600,20845697-20846006,20846097-208462...    29   4.4  
03_02_0674 - 10329933-10331537                                         29   4.4  
10_08_0951 - 21769342-21769752                                         29   5.8  

>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 66/158 (41%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
 Frame = +1

Query: 265 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 438
           PT+ +  +SS    FS  + +  +R ++  GTV ILLAGR  GKRVV +  L SGLLLVT
Sbjct: 71  PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130

Query: 439 GPFAFNSCPLRRIPQRYVIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTS 618
           GPF  N  P+RR+ Q YVI TSTK   +  N +       SR      + +  AK+    
Sbjct: 131 GPFKINGVPIRRVNQPYVIATSTKVDISGVNVEKFDDKYFSR------DKKQKAKKTEGE 184

Query: 619 L-PQKKRNTFHLSS-AKPIQKTVDXAVIKAIGARPDKK 726
           L   +K  T +L    K  QK VD  +IKAI A PD K
Sbjct: 185 LFETEKEATKNLPEFKKEDQKVVDAELIKAIEAVPDLK 222


>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 84.6 bits (200), Expect = 8e-17
 Identities = 63/159 (39%), Positives = 83/159 (52%), Gaps = 3/159 (1%)
 Frame = +1

Query: 259 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 435
           FYP  + K RA S  +    +  ++R  +  GTV ILLAGR+ GKRVV +  L SGLLL+
Sbjct: 50  FYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLI 106

Query: 436 TGPFAFNSCPLRRIPQRYVIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMT 615
           TGPF  N  P+RR+ Q YVI TSTK   +            +R      + ++ AK+   
Sbjct: 107 TGPFKINGVPIRRVNQAYVIATSTKVDISGVKVDKFDDKYFAR------DKKAKAKKTEG 160

Query: 616 SL-PQKKRNTFHLSS-AKPIQKTVDXAVIKAIGARPDKK 726
            L   +K  T +L    K  QK VD  +IKAI   PD K
Sbjct: 161 ELFETEKEATKNLPDFKKDDQKAVDAELIKAIEVVPDLK 199


>02_02_0470 - 10700092-10700505
          Length = 137

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 340 LKIGTVCILLAGRHAGKRVVLVGILPSG 423
           LK G   ILL GR+AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRYAGRKAVIVRVFEEG 32


>05_04_0389 -
           20845490-20845600,20845697-20846006,20846097-20846242,
           20846319-20846426,20846508-20846615,20846997-20847109,
           20847340-20847437,20847530-20847714,20847811-20847953,
           20848293-20848377,20848486-20848624,20848686-20848780,
           20848894-20849037,20849114-20849206,20849310-20849376,
           20849529-20849641,20849750-20849845,20853885-20854058
          Length = 775

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 805 DLRSAADGEYWLEXESEGRLEVSAEAPS 722
           +L S   GE W+  ES GR  VS +APS
Sbjct: 602 NLTSMGKGEVWVNGESIGRYWVSFKAPS 629


>03_02_0674 - 10329933-10331537
          Length = 534

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 23/108 (21%), Positives = 46/108 (42%)
 Frame = +1

Query: 469 RRIPQRYVIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFH 648
           RR+     + T  K H+  ++     ++   +R+R++ ++    K    + P KK+ T  
Sbjct: 146 RRVRASSDLDTKVK-HATPTSLPKRIVIEADQRVRASPDLDMKVKHASPAPPFKKKATAD 204

Query: 649 LSSAKPIQKTVDXAVIKAIGARPDKKVLPRIPQGGLRTPXPANIPHRL 792
            SS   + KT   ++ K   + P      R+    + +   AN P +L
Sbjct: 205 CSSRVDLAKTSQPSLTKT--SAPPVVAGARVKAPDMGSATKANPPKKL 250


>10_08_0951 - 21769342-21769752
          Length = 136

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 340 LKIGTVCILLAGRHAGKRVVLVGILPSG 423
           LK G   ILL GR AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRFAGRKAVIVRVFEEG 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,105,836
Number of Sequences: 37544
Number of extensions: 494500
Number of successful extensions: 1230
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)