Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30315.Seq
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               38   0.013
SB_27497| Best HMM Match : Death (HMM E-Value=0.028)                   32   0.48 
SB_22723| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.63 
SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)                29   3.4  
SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)                   29   3.4  
SB_3148| Best HMM Match : Keratin_B2 (HMM E-Value=0.26)                28   7.7  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 37.5 bits (83), Expect = 0.013
 Identities = 27/95 (28%), Positives = 39/95 (41%)
 Frame = +1

Query: 442 PFAFNSCPLRRIPQRYVIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSL 621
           PF  N  PLRRIPQ YVI TST    +       +    S         + +      + 
Sbjct: 2   PFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESYFKGEPKKKKRSEDMFEEAA 61

Query: 622 PQKKRNTFHLSSAKPIQKTVDXAVIKAIGARPDKK 726
            +KK +   ++     QK VD  ++  I A P+ K
Sbjct: 62  EEKKPSEQRIAD----QKAVDDQILPKISAVPNMK 92


>SB_27497| Best HMM Match : Death (HMM E-Value=0.028)
          Length = 892

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +2

Query: 194 VKQIGGEKNGGTRTVPLKRRSPSTPLRRKSVPHLVAVHSASMYAGSDP 337
           VK++ G     TR VP++ ++   P +   V  LV  HS   Y GSDP
Sbjct: 257 VKEMLGLSPFATRDVPMRNKAIKLPKKAPPV-FLVCTHSDEPYEGSDP 303


>SB_22723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -2

Query: 802 LRSAADGEYWLEXESEGRLEVSAEAPSCRVGLQWL*SQXHRLSSESVLRCSDGTY 638
           LR    G+YW+  E E    +   APS R  + W   + H LS +   R +D T+
Sbjct: 29  LRKHTPGKYWILMEPEKTSRIEGSAPSTR-RVTW--QRGHHLSIDQYKRLTDPTH 80


>SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)
          Length = 204

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +1

Query: 436 TGPFAFNSCPLRRIPQRYVIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMT 615
           T   A N+C  RR  ++      T    AT+NC+  +  +   +  +A    +N +R   
Sbjct: 92  TAEGATNNC--RRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTTAEGATNNCRRRNE 149

Query: 616 SLPQKKRNT 642
            LP+ +R T
Sbjct: 150 QLPKAQRTT 158



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +1

Query: 436 TGPFAFNSCPLRRIPQRYVIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMT 615
           T   A N+C  RR  ++      T    AT+NC+  +  +   +  +A    +N +R   
Sbjct: 114 TAEGATNNC--RRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTTAEGTTNNCRRHNE 171

Query: 616 SLPQKKRNT 642
            LP+ +R T
Sbjct: 172 QLPKAQRTT 180



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +1

Query: 454 NSCPLRRIPQRYVIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKK 633
           N+C  RR  ++      T    AT+NC+  +  +   +  +A    +N +R    LP+ +
Sbjct: 76  NNC--RRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQ 133

Query: 634 RNT 642
           R T
Sbjct: 134 RTT 136


>SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)
          Length = 435

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 22/80 (27%), Positives = 36/80 (45%)
 Frame = +1

Query: 499 TSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIQKT 678
           + TK    T   +NT    TSR+ +++SN +++ K   +   +  RNT      K   + 
Sbjct: 74  SKTKTSHKTKTSRNTK---TSRKTKTSSNTKTSLKTKTSRNTKTSRNTKTKPQDKNKPQD 130

Query: 679 VDXAVIKAIGARPDKKVLPR 738
            D    +  GARP +   PR
Sbjct: 131 QDKPQDQDQGARPRQATRPR 150


>SB_3148| Best HMM Match : Keratin_B2 (HMM E-Value=0.26)
          Length = 147

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
 Frame = +3

Query: 279 NPCLIWWPSIQQACTQDPTQPEDRNCLHSPRW*TCRQEGCT----CWNSAQRSAFSYWTF 446
           NPC+   P+  + C Q   QP    C++S     C Q   T    C     +   +  T 
Sbjct: 14  NPCVQTAPTSTRVCKQHQHQPV---CVNSTNINPCVQTAPTSTRVCKQHQHQPVCANSTN 70

Query: 447 CIQFVPATPYSSALCDRHLHQ 509
               V   P S+ +C +H HQ
Sbjct: 71  INPCVQTAPTSTRVCKQHQHQ 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,428,334
Number of Sequences: 59808
Number of extensions: 534188
Number of successful extensions: 1368
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)