Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30315.Seq
         (806 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    83   3e-16
AC024744-1|AAL00859.1|  685|Caenorhabditis elegans Hypothetical ...    31   0.73 
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    31   0.97 
Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U88183-3|AAB52656.2|  593|Caenorhabditis elegans Warthog (hedgeh...    28   6.8  
AF139521-1|AAD33831.1|  180|Caenorhabditis elegans warthog prote...    28   6.8  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 63/159 (39%), Positives = 77/159 (48%), Gaps = 2/159 (1%)
 Frame = +1

Query: 328 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 504
           +R  L  GTV I+LAGRH GKRVV +  LP SGLLLVTGP   N  PLRRI Q +VI TS
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126

Query: 505 TKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIQKTVD 684
            K + +          I     +  S  Q   K +  S   K   T      K I KTVD
Sbjct: 127 LKVNVSGVKIPE---HINDEYFKRKSTAQKTGKNIFAS--GKTEYTVSEQRKKDI-KTVD 180

Query: 685 XAVIKAIGARPDKKVLPRIPQGGLRTPXPAN-IPHRLRF 798
             ++ AI   P+ K L      G R     N  PH+++F
Sbjct: 181 APILAAIKKHPEHKFL--FGYLGTRFSLGKNQYPHKMQF 217


>AC024744-1|AAL00859.1|  685|Caenorhabditis elegans Hypothetical
           protein Y108G3AL.3 protein.
          Length = 685

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = +1

Query: 457 SCPLRRIPQRYVIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKR 636
           + P  R P R   G S +  + T N +N     T+RR    S+V  NA +   S+P++++
Sbjct: 492 NAPATRPPSRKAAGGSHEPRAKTPNQKNKDERPTTRR----SSVDKNAPKRNDSVPRERK 547

Query: 637 NTFHLSSAKP 666
           ++     +KP
Sbjct: 548 SSVSHDESKP 557


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 259 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 393
           FYPT+   +A S G P +       PN ++  V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical protein
            F23D12.2 protein.
          Length = 1322

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +2

Query: 218  NGGTRTVPLKRRSPSTPLRRKSVPHLVAVHSASMYAGSDPT*R*ELFA 361
            NGGT+ + L +  P TP+   SV   V V S  +     P    EL A
Sbjct: 975  NGGTKGMSLSQTLPQTPIALSSVVESVEVISCKVSTEISPAKADELVA 1022


>U88183-3|AAB52656.2|  593|Caenorhabditis elegans Warthog
           (hedgehog-like family)protein 6 protein.
          Length = 593

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 778 YWLEXESEGRLEVSAEAPSC 719
           Y +E +SEG+  +S EAPSC
Sbjct: 35  YKMEVDSEGKPVISCEAPSC 54


>AF139521-1|AAD33831.1|  180|Caenorhabditis elegans warthog protein
           WRT-6 protein.
          Length = 180

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 778 YWLEXESEGRLEVSAEAPSC 719
           Y +E +SEG+  +S EAPSC
Sbjct: 35  YKMEVDSEGKPVISCEAPSC 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,685,306
Number of Sequences: 27780
Number of extensions: 394366
Number of successful extensions: 949
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)