Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30315.Seq
         (806 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    90   2e-18
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    87   2e-17
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    86   3e-17
At2g27270.1 68415.m03277 expressed protein                             28   6.3  
At1g27190.1 68414.m03312 leucine-rich repeat transmembrane prote...    28   6.3  
At3g62200.1 68416.m06988 expressed protein contains Pfam profile...    28   8.4  

>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 60/157 (38%), Positives = 83/157 (52%)
 Frame = +1

Query: 259 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 438
           FYP ++ ++     R   K  + ++ ++  GTV I+LAGR  GKRVV +  L SGLLLVT
Sbjct: 64  FYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVT 121

Query: 439 GPFAFNSCPLRRIPQRYVIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTS 618
           GPF  N  PLRR+ Q YVIGTSTK   +  N +         ++      ++  +     
Sbjct: 122 GPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFG-KVAEKKKKKTEGEFFEAE 180

Query: 619 LPQKKRNTFHLSSAKPIQKTVDXAVIKAIGARPDKKV 729
             +KK         K  QKTVD A+IK+I A P+ KV
Sbjct: 181 KEEKKEIP---QEKKEDQKTVDAALIKSIEAVPELKV 214


>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 59/156 (37%), Positives = 80/156 (51%)
 Frame = +1

Query: 259 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 438
           FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L SGLLLVT
Sbjct: 64  FYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVT 121

Query: 439 GPFAFNSCPLRRIPQRYVIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTS 618
           GPF  N  PLRR+ Q YVIGTSTK   +              ++      ++  +     
Sbjct: 122 GPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFG-KVAEKKKKKTEGEFFEAE 180

Query: 619 LPQKKRNTFHLSSAKPIQKTVDXAVIKAIGARPDKK 726
             +KK         K  QK VD A+IKAI A P+ K
Sbjct: 181 KEEKKEIP---QGKKDDQKAVDAALIKAIEAVPELK 213


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 59/156 (37%), Positives = 80/156 (51%)
 Frame = +1

Query: 259 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 438
           FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L SGLLLVT
Sbjct: 64  FYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVT 121

Query: 439 GPFAFNSCPLRRIPQRYVIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTS 618
           GPF  N  PLRR+ Q YVIGTSTK   +              ++      ++  +     
Sbjct: 122 GPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFG-KVAEKKKKKTEGEFFEAE 180

Query: 619 LPQKKRNTFHLSSAKPIQKTVDXAVIKAIGARPDKK 726
             +KK         K  QK VD A+IKAI A P+ K
Sbjct: 181 KEEKKEIP---QVKKDDQKAVDAALIKAIEAVPELK 213


>At2g27270.1 68415.m03277 expressed protein
          Length = 231

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +1

Query: 265 PTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGP 444
           PT++K  A   G   SKH R +  +    + C+       GK ++  G+  + +LL+   
Sbjct: 21  PTKKKTEAKEEGAAASKHSRVVYSD---KSRCL----SKNGKTIIYFGVPAALILLIICV 73

Query: 445 FAFNSCPLR-RIPQ 483
           FAFN   ++ R+P+
Sbjct: 74  FAFNYIAIQPRVPR 87


>At1g27190.1 68414.m03312 leucine-rich repeat transmembrane protein
           kinase, putative similar to CLV1 receptor kinase
           GB:AAB58929 GI:2160756 from [Arabidopsis thaliana]
          Length = 601

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +3

Query: 381 CRQEGCTCWNSAQRSAFSYWTFCIQFVPATPYSSALCDRHLHQISL-GN 524
           C+  G +CWN  +    S     +Q     P S  LC R L  + L GN
Sbjct: 59  CKLTGVSCWNEKENRIISLQLQSMQLAGEIPESLKLC-RSLQSLDLSGN 106


>At3g62200.1 68416.m06988 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 673

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 220 WGNQNSTPQT*ESFYPTQEKIRASSGGRPFSKHVRRIRP 336
           W N NS P   +++YP   +  A++   P+    R  RP
Sbjct: 319 WNNGNSIPNHAQNYYPNAARPGAATMRPPYGNVFRPYRP 357


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,830,630
Number of Sequences: 28952
Number of extensions: 371884
Number of successful extensions: 956
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)