Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30314.Seq
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57380.1 68418.m07169 fibronectin type III domain-containing ...    30   1.8  
At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb...    29   2.4  
At2g26750.1 68415.m03208 epoxide hydrolase, putative strong simi...    29   3.2  
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa...    28   7.3  
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica...    28   7.3  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    27   9.7  

>At5g57380.1 68418.m07169 fibronectin type III domain-containing
           protein / PHD finger protein-related contains Pfam
           profiles PF00041: Fibronectin type III domain, PF00628:
           PHD-finger
          Length = 600

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +2

Query: 341 DRDRVECCSSLEQESTIKERGLQRQRAKNRLSGR 442
           D+D  E CS+ E ES ++E  L +++A N++ GR
Sbjct: 434 DKDNTEHCSAGEVESELEEERLVKRKA-NKIDGR 466


>At1g19230.1 68414.m02393 respiratory burst oxidase protein E
           (RbohE) / NADPH oxidase nearly identical to respiratory
           burst oxidase protein E GI:3242787 [gi:3242787] from
           [Arabidopsis thaliana]
          Length = 926

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 397 TWTPTSK--GEKPSIRAMAHYVNHHPNQVFWGRGAVK 501
           T TPTS   G+K +++A  ++V   P  V W RG ++
Sbjct: 777 TATPTSTHGGKKKAVKAHFYWVTREPGSVEWFRGVME 813


>At2g26750.1 68415.m03208 epoxide hydrolase, putative strong
           similarity to ATsEH [Arabidopsis thaliana] GI:1109600
          Length = 320

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 185 CGPLRYYASWRKGDVLQGD*VG*RQXFPSHYVV 87
           CGP+ YY ++ + + L G  VG +   P+ +V+
Sbjct: 228 CGPVNYYRNFNRNNELLGPWVGSKIQVPTKFVI 260


>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
           family protein similar to C-terminal zinc-finger
           [Glycine max] GI:558543; contains Pfam profile: PF00097
           zinc finger, C3HC4 type (RING finger)
          Length = 486

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 403 TPTSKGEKPSIRAMAHYVNHHP 468
           T +S+   PS+    HY++HHP
Sbjct: 260 TSSSRNPTPSVYQRNHYISHHP 281


>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|Q03468 Excision
           repair protein ERCC-6 (Cockayne syndrome protein CSB)
           {Homo sapiens}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1187

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 48  PIVSRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCA 212
           PI +++T  W  F  V  GK   LP   A   +P++  G     P  ++    CA
Sbjct: 576 PIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCA 630


>At1g03080.1 68414.m00282 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1744

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +2

Query: 329  IKRIDRDRVECCSSLEQESTIKERGLQRQRAK 424
            ++ +  + VE C +LE  ST+K+R +++ + +
Sbjct: 1340 LEGLTNELVEACKNLESRSTLKDREIEQLKGR 1371


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,017,381
Number of Sequences: 28952
Number of extensions: 291769
Number of successful extensions: 581
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)