Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30312.Seq
         (546 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7BPF2 Cluster: LacZ alpha peptide; n=1; Beggiatoa sp. ...    58   1e-07
UniRef50_Q8GEF9 Cluster: Putative uncharacterized protein; n=1; ...    42   0.009
UniRef50_Q5CYC7 Cluster: Uncharacterized protein with predicted ...    32   9.9  

>UniRef50_A7BPF2 Cluster: LacZ alpha peptide; n=1; Beggiatoa sp.
           SS|Rep: LacZ alpha peptide - Beggiatoa sp. SS
          Length = 73

 Score = 58.0 bits (134), Expect = 1e-07
 Identities = 35/71 (49%), Positives = 35/71 (49%)
 Frame = -1

Query: 438 DAPCSGALSAAGVVVTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXQALNRGLPLGFRF 259
           DAPCSGALSAAGVVVTR                            P QALNRGLPLGFRF
Sbjct: 2   DAPCSGALSAAGVVVTRSVTATLASALAPAPFAFFPSFLATFAGFPRQALNRGLPLGFRF 61

Query: 258 SVYGTSTPKNL 226
           S      PK L
Sbjct: 62  SALRHLDPKKL 72


>UniRef50_Q8GEF9 Cluster: Putative uncharacterized protein; n=1;
           Erwinia amylovora|Rep: Putative uncharacterized protein
           - Erwinia amylovora (Fire blight bacteria)
          Length = 99

 Score = 41.9 bits (94), Expect = 0.009
 Identities = 17/22 (77%), Positives = 18/22 (81%)
 Frame = +2

Query: 449 FSGKCXRNPYLFXFPNTFQYYS 514
           FSGKC RNPYLF F NTF+Y S
Sbjct: 26  FSGKCARNPYLFIFLNTFKYVS 47


>UniRef50_Q5CYC7 Cluster: Uncharacterized protein with predicted
           coiled coil regions; n=2; Cryptosporidium|Rep:
           Uncharacterized protein with predicted coiled coil
           regions - Cryptosporidium parvum Iowa II
          Length = 825

 Score = 31.9 bits (69), Expect = 9.9
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 95  DRDRVECCSSLEQESTIKERGLQRQRAKNRL 187
           +RD V  C S+ Q+S IKER L+ ++ K +L
Sbjct: 128 ERDNVSKCLSIRQQSLIKERELRLEKTKLKL 158


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 479,773,988
Number of Sequences: 1657284
Number of extensions: 8656953
Number of successful extensions: 17003
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16999
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35405708495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)