Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30311.Seq
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    31   0.23 
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    27   3.7  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    27   4.8  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   8.5  

>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +3

Query: 195 HRGHQSVRQVSDQDEGEAVSVPCITVS-CMNISIDEYAARTNIXRTVSIXELVSISQSAC 371
           H   QS RQ+  +     +S+   TVS    +  +   ++TN  +      L  +S S C
Sbjct: 777 HDSSQSARQLKARSTATTISISLSTVSDVFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTC 836

Query: 372 TAGDVSRMSR 401
            A  V+++ +
Sbjct: 837 NANSVNKLMK 846


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -2

Query: 885 EPIGKGRSPLGVXSRGFSXTNSFPG--TGXPPRXFVTLAPRPERRRRTPLQETSGHMXME 712
           E  GK  S     +   S +N+ P   TG P R   +  P  E+RRRT   E S  + ++
Sbjct: 460 EKTGKSNSQQAPSNHVLSKSNTVPNLVTGFPTR---SDNPPNEKRRRTSSSENSRALDIQ 516

Query: 711 FASS 700
            ++S
Sbjct: 517 LSAS 520


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 798 PRXFVTLAPRPERRRRTPLQETSG 727
           P     ++P+P RR RTP++  SG
Sbjct: 530 PLQNTVISPQPTRRSRTPIRSLSG 553


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +3

Query: 21  PATVRYAQRVPAPRAKVSAETALARGV*ERRSD--DRR*GWRTXRVALSQSLVRSTRGRA 194
           P  V     +  PR K    T+    + +  SD  D   G    +   + S++ +T   +
Sbjct: 348 PPEVHLTGEILKPRKKRQESTSSVHRIGKESSDRKDGISGQNKLQQFATISILNNTNATS 407

Query: 195 HRGHQSVRQVSDQD 236
           H G+QSVR+ + ++
Sbjct: 408 HLGNQSVRERAPEE 421


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -1

Query: 385  TSPAVQADCEIDTSSSIDTVLXMLVLAAYSSMDMFMQETVMHGTDTASPSSWS 227
            +S  V +     TS S    +   V  A +S        V  GTD+A+ SSW+
Sbjct: 877  SSSVVSSSLSSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTDSATSSSWT 929


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,350,061
Number of Sequences: 5004
Number of extensions: 62767
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)