Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30311.Seq
         (907 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0244 + 2549102-2549158,2549205-2549334,2549422-2549559,255...    31   1.7  
03_05_0572 + 25727299-25727405,25727720-25727780                       29   5.1  
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521...    29   6.7  

>10_01_0244 +
           2549102-2549158,2549205-2549334,2549422-2549559,
           2550078-2550205,2550346-2550396
          Length = 167

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 349 CLSHNRPAPLATCPGCLESFRTSWDWHEE 435
           C+S ++P     CP CLE FR S ++ EE
Sbjct: 91  CVSEDKPDEEDVCPICLEVFRYSPEYDEE 119


>03_05_0572 + 25727299-25727405,25727720-25727780
          Length = 55

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 386 VQDVSSHSGQAG-IGTRNCQRDGSALAQTVSEA 481
           V+ V SH G+ G +GTR  +  G ALA T +EA
Sbjct: 3   VEGVDSHGGKVGGMGTRGGKVGGMALAATRAEA 35


>06_03_1117 +
           27750291-27750338,27751360-27751812,27751987-27752161,
           27752227-27752551,27752705-27752786,27752820-27752889,
           27753341-27753420,27753514-27753750
          Length = 489

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 82  LRLPAESESGEVTTGARDGARXVLRCLKVWFDLPADVLIGAINLF 216
           LR+P ++ +  VT GA   A       + W D+P  V++  +  F
Sbjct: 310 LRIPTQTANRRVTNGAHQRASQQYSYNRFWQDIPILVMVSMLAYF 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,788,475
Number of Sequences: 37544
Number of extensions: 526105
Number of successful extensions: 1541
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1541
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)