Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30311.Seq
         (907 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52798| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.55 
SB_38183| Best HMM Match : EGF (HMM E-Value=3.6e-08)                   29   3.9  
SB_48625| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_14311| Best HMM Match : Beach (HMM E-Value=9.1e-13)                 28   9.0  
SB_59619| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_1724| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.0  

>SB_52798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 32.3 bits (70), Expect = 0.55
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 345 LVSISQSACTAGDVSRMSRVIQDKLG 422
           L+ +S  +CT  D+ RM R+I DKLG
Sbjct: 14  LIGVSGLSCTPSDLLRMERIILDKLG 39


>SB_38183| Best HMM Match : EGF (HMM E-Value=3.6e-08)
          Length = 51

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 446 HADSSSCQSQLVLNDSRHPGHVASGAGRL*DRHQLXY*HC-PXYVGP 309
           HA+  SC    V+N + HP    +G GR  +R      HC P + GP
Sbjct: 2   HAERDSCHRLAVVNHNCHPNPCQNG-GRCEERDDGYDCHCVPPFQGP 47


>SB_48625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 64  QKSQPKLRLPAESESGEVTTGARDGARXVLRCLKVWFDLPADVLIGA 204
           Q+  P LR     E+  +T  AR+    VL C K WFD   + ++ A
Sbjct: 64  QRRLPLLRNATVGEAEGLTEFARECTPRVLSCRKNWFDCAKNKVMNA 110


>SB_14311| Best HMM Match : Beach (HMM E-Value=9.1e-13)
          Length = 580

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
 Frame = -1

Query: 499 SACISNSFRYSLSQCRAVTLTVPRANPSLS*MTRDILDTSPAVQADCEIDTSSSIDTVLX 320
           +A IS+S    +S  + + L   R +  +  +  D    +   +AD  ID+         
Sbjct: 210 NAIISHSSIRCVSLIKIIMLRYYRPSDRVHVLCTDTTLITMYQKADAAIDSER------- 262

Query: 319 MLVLAAYSSMDMFMQETVMHGTDTASPSSWSETCRTD*---WPR*ARPRVDRTR 167
           +L+ A  S   M  Q  V HG  +ASP     T   D    WPR + PR  RTR
Sbjct: 263 LLLSAVLSWAAMNGQLDVYHGGTSASPMLLMGTKTPDKRRAWPRASLPRQPRTR 316


>SB_59619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 552 PCATPPAPTLRTSELALVLLFHKLEKQLVRMV*KRNDCPXKXFYMYD-FARNLQIPXPYV 728
           P  T P P+ +  ++ L + F++ +KQLV  +    D P K   + D F R   I    +
Sbjct: 278 PKPTKPLPSTKRGKIMLTIGFNEEKKQLVVHLVNAVDLPMKNNNLLDSFVREFSIFTVSL 337

Query: 729 RKFPE 743
             FP+
Sbjct: 338 IYFPD 342


>SB_1724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 899

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -1

Query: 325 LXMLVLAAYSSMDMFMQETVMHGTDTASPSSWSETCRT 212
           L +  +A+    + FMQET++  ++TAS S+ S+  RT
Sbjct: 51  LGIKAIASPLRKNQFMQETIVEASETASSSAESKIERT 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,153,835
Number of Sequences: 59808
Number of extensions: 571177
Number of successful extensions: 1346
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)