Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30311.Seq
         (907 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   5.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 515 PVLSGVSMHQQQLPIQSEPVQSRHADSSSCQSQLVLND 402
           P  S +SM    +PI S P  S   +S + +   V+ND
Sbjct: 842 PTTSVISMSGTTVPITSLPASSTSINSITVEKD-VIND 878



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 374  RWRRVQDVSSHSGQAGIGTRNCQRDGSALAQTVSEAVADAC*RRRVLAQESELVNL 541
            +++ V    + SGQ+ I     Q+  S  AQTV    A    +  VLA  ++ V +
Sbjct: 1161 QYQVVSQAQTSSGQSKIIASTQQQQQSQQAQTVRMVTAQLAGKPIVLASGNKNVGV 1216


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -1

Query: 724 YGHGICKF 701
           YGHG+CK+
Sbjct: 278 YGHGVCKW 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,347
Number of Sequences: 438
Number of extensions: 4517
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)