Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30311.Seq
         (907 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03740.1 68417.m00513 hypothetical protein                          29   3.2  
At1g50710.1 68414.m05702 expressed protein                             29   4.2  
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas...    29   5.6  
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    28   7.4  
At3g26650.1 68416.m03330 glyceraldehyde 3-phosphate dehydrogenas...    28   9.8  
At2g29680.2 68415.m03608 cell division control protein CDC6, put...    28   9.8  
At1g12900.1 68414.m01498 glyceraldehyde 3-phosphate dehydrogenas...    28   9.8  

>At4g03740.1 68417.m00513 hypothetical protein 
          Length = 345

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 327 SFXCWS*PHTRLWICSCRRQ*CTALTRPHLHLGQK 223
           +F   S PHT LW C   +  C  + RPH HL +K
Sbjct: 69  TFALGSCPHT-LWPCWVSQVCCIKIFRPHEHLERK 102


>At1g50710.1 68414.m05702 expressed protein
          Length = 423

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 16  SAQQLYATLNEYLLLEQKSQPKLRLPAESESGEV 117
           ++ Q+Y TL   L++ + +Q KLRLP  S+ GE+
Sbjct: 100 NSPQVYETLEHRLVVAEAAQ-KLRLPLISDGGEI 132


>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
           B, chloroplast (GAPB) / NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit B
           identical to SP|P25857 Glyceraldehyde 3-phosphate
           dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
           (NADP-dependent glyceraldehydephosphate dehydrogenase
           subunit B) {Arabidopsis thaliana}
          Length = 447

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 9/32 (28%), Positives = 22/32 (68%)
 Frame = +3

Query: 354 ISQSACTAGDVSRMSRVIQDKLGLARGTVSVT 449
           IS ++CT   ++  ++V+ ++ G+ +GT++ T
Sbjct: 230 ISNASCTTNCLAPFAKVLDEEFGIVKGTMTTT 261


>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = -3

Query: 251  HGLTFILVRNLSNRLMAPMSTSAGRSNQ-TLRQ-RNTXRAPSLAPVVTSPLSDSAGKR 84
            +G   +L+RNLS+   +  S +    +Q ++RQ R+      L+P++  P+SDS  +R
Sbjct: 1598 YGEDNMLMRNLSSERSSGNSVTLDSGSQMSMRQSRSALLWSVLSPIINMPISDSKRQR 1655


>At3g26650.1 68416.m03330 glyceraldehyde 3-phosphate dehydrogenase
           A, chloroplast (GAPA) / NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit A
           identical to SP|P25856 Glyceraldehyde 3-phosphate
           dehydrogenase A, chloroplast precursor (EC 1.2.1.13)
           (NADP-dependent glyceraldehydephosphate dehydrogenase
           subunit A) {Arabidopsis thaliana}
          Length = 396

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 354 ISQSACTAGDVSRMSRVIQDKLGLARGTVSVT 449
           IS ++CT   ++   +V+  K G+ +GT++ T
Sbjct: 208 ISNASCTTNCLAPFVKVLDQKFGIIKGTMTTT 239


>At2g29680.2 68415.m03608 cell division control protein CDC6,
           putative almost identical to DNA replication protein
           CDC6 GI:18056480 from [Arabidopsis thaliana];  identical
           to cDNA CDC6 protein (2g29680 gene) GI:18056479
          Length = 508

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
 Frame = +1

Query: 61  EQKSQPKLRLPAESESGEVTTGARDGARXVLRCLKVWFDLPAD--VLIG---AINLFDRF 225
           +Q+S+ K+ L    E   + T  RD  R VL  L +   LP    +LIG   AI+L DRF
Sbjct: 236 QQQSRSKMMLIIADEMDYLIT--RD--RGVLHELFMLTTLPLSRCILIGVANAIDLADRF 291

Query: 226 LTKMKVRPCQ 255
           L K+K   C+
Sbjct: 292 LPKLKSLNCK 301


>At1g12900.1 68414.m01498 glyceraldehyde 3-phosphate dehydrogenase,
           chloroplast, putative / NADP-dependent
           glyceraldehydephosphate dehydrogenase, putative similar
           to SP|P25856 Glyceraldehyde 3-phosphate dehydrogenase A,
           chloroplast precursor (EC 1.2.1.13) (NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit A)
           {Arabidopsis thaliana}; contains Pfam profiles PF02800:
           Glyceraldehyde 3-phosphate dehydrogenase C-terminal
           domain, PF00044: Glyceraldehyde 3-phosphate
           dehydrogenase NAD binding domain
          Length = 399

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 354 ISQSACTAGDVSRMSRVIQDKLGLARGTVSVT 449
           IS ++CT   ++   +V+  K G+ +GT++ T
Sbjct: 211 ISNASCTTNCLAPFVKVLDQKFGIIKGTMTTT 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,483,965
Number of Sequences: 28952
Number of extensions: 370782
Number of successful extensions: 969
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2139598560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)