Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30310.Seq
         (609 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IPJ1 Cluster: CG17377-PC, isoform C; n=6; melanogaste...    47   3e-04
UniRef50_UPI0000D9D3FA Cluster: PREDICTED: hypothetical protein;...    34   3.0  
UniRef50_UPI0000E49E54 Cluster: PREDICTED: similar to MGC108253 ...    32   9.3  

>UniRef50_Q8IPJ1 Cluster: CG17377-PC, isoform C; n=6; melanogaster
           subgroup|Rep: CG17377-PC, isoform C - Drosophila
           melanogaster (Fruit fly)
          Length = 287

 Score = 47.2 bits (107), Expect = 3e-04
 Identities = 20/33 (60%), Positives = 24/33 (72%)
 Frame = +2

Query: 509 KSRELRGGIMYYSCHCXKRNGLQHXXRRTGCRG 607
           +SRELR GIMY +C C KRNGLQ    R+ C+G
Sbjct: 14  RSRELRCGIMYTTCDCVKRNGLQDKCPRSACQG 46


>UniRef50_UPI0000D9D3FA Cluster: PREDICTED: hypothetical protein;
           n=1; Macaca mulatta|Rep: PREDICTED: hypothetical protein
           - Macaca mulatta
          Length = 99

 Score = 33.9 bits (74), Expect = 3.0
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 425 KKVGRWKQRRAGGWLQKKG*KRKSVKENKSRELR 526
           K++G W+QR+ GG  QK G +R SV +    E R
Sbjct: 64  KELGSWRQRKTGGQRQKLGSERGSVHQGTPEEWR 97


>UniRef50_UPI0000E49E54 Cluster: PREDICTED: similar to MGC108253
           protein, partial; n=3; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to MGC108253 protein,
           partial - Strongylocentrotus purpuratus
          Length = 1302

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 12/28 (42%), Positives = 22/28 (78%)
 Frame = +3

Query: 423 KKKSADGNSGGQEGGSKKKDENENQLKR 506
           K+K ++ +SGG+EGG + + E E+++KR
Sbjct: 181 KRKLSEMSSGGEEGGDEDEKEEEDKMKR 208


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 559,516,089
Number of Sequences: 1657284
Number of extensions: 10811121
Number of successful extensions: 27191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27108
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)