Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30310.Seq
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0505 + 25719959-25720052,25721548-25722266                       31   0.71 
03_01_0373 - 2904914-2904949,2905030-2905144,2906446-2906534,290...    29   2.2  
12_02_0280 - 16729000-16729678,16729948-16730039,16730072-167307...    28   5.0  
03_02_0091 + 5574528-5577254                                           28   5.0  
05_04_0293 - 19898254-19898819,19899698-19899701                       28   6.7  
02_01_0211 - 1406098-1406227,1406581-1406714,1407241-1407380,140...    28   6.7  
03_05_0670 - 26594292-26594785,26595222-26595531                       27   8.8  
03_05_0145 + 21254448-21255488                                         27   8.8  

>04_04_0505 + 25719959-25720052,25721548-25722266
          Length = 270

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 25/76 (32%), Positives = 31/76 (40%)
 Frame = +3

Query: 189 PLQCLPRSAFKRNGLQDCQFFQKVRFATCAVPALVLNRVHRPVRRVCDAPRPARHTSHDS 368
           P Q  PR     +G +     +  R A  A P     R+    RR  D PRPAR   H +
Sbjct: 51  PNQRAPRRLIGDHGRKPLTLHEGRREAF-ATPPKSYGRLLGRRRRHRDLPRPARGVDHPA 109

Query: 369 VTLI*CHNGSHLATLR 416
           VTL   H  S    +R
Sbjct: 110 VTLRGLHPSSETGDIR 125


>03_01_0373 -
           2904914-2904949,2905030-2905144,2906446-2906534,
           2906670-2906889,2907921-2907985,2908619-2908879,
           2909204-2909417,2910643-2910698,2910891-2910947,
           2911043-2911115,2912711-2913225
          Length = 566

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +3

Query: 423 KKKSADGNSGGQEGGSKKKDENENQLKRTKA 515
           K++S+   SGG  GG +++D+ E + KR+++
Sbjct: 31  KERSSRRRSGGGGGGDEERDDGERRSKRSRS 61


>12_02_0280 -
           16729000-16729678,16729948-16730039,16730072-16730772,
           16731033-16731144,16731961-16731970,16732954-16733663
          Length = 767

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +2

Query: 89  NKFSSLLHLPVFYYNHVYSMRPYGMLQI*RLRSSAPVFASVSFQAKWLTRLPVFSK 256
           N  +SL+ L      HV S +PY    I RLR+SAP    +  +A W+    +  K
Sbjct: 543 NDVTSLIELRC---RHVSSGQPYSSKVITRLRTSAPPIWVIIRRAFWMVHRLIIRK 595


>03_02_0091 + 5574528-5577254
          Length = 908

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 121 ILLQSCVLHAALWYVTNMKIAVLRSSVCLGQLSSEMAYKTASFFKR 258
           + L   V  AALW   ++  A  R  VC G +S     K   FF+R
Sbjct: 481 VKLHGVVRGAALWIARDLGKAPNRWVVCTGGVSLRSRQKLVEFFER 526


>05_04_0293 - 19898254-19898819,19899698-19899701
          Length = 189

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 106 PPFACILLQSCVLHAAL 156
           PP AC +LQ C LH+ L
Sbjct: 82  PPLACAILQECELHSYL 98


>02_01_0211 -
           1406098-1406227,1406581-1406714,1407241-1407380,
           1407639-1407829,1408853-1409346
          Length = 362

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 432 SADGNSGGQEGG--SKKKDENENQLKRTKAVNCEVGL 536
           SADG  GG  GG  +++K E   QL++   V   +G+
Sbjct: 66  SADGGGGGGGGGEEAERKREKSRQLQKRVLVGVAIGV 102


>03_05_0670 - 26594292-26594785,26595222-26595531
          Length = 267

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 476 KG*KRKSVKENKSRELRGGIMYYSCHCXKRNGLQHXXRRTGCRG 607
           +G +R+  ++   R LR  ++   C C  R  L+H  +  G RG
Sbjct: 44  RGERRQGEEKADRRRLRSRLVRRRCSCLVRRLLRHGSQEQGRRG 87


>03_05_0145 + 21254448-21255488
          Length = 346

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 426 KKSADGNSGGQEGGSKKKDENENQLKR 506
           K+S +GN G   GG+ K+D  E   +R
Sbjct: 218 KRSLNGNGGAYGGGAAKRDPGERSGRR 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,775,663
Number of Sequences: 37544
Number of extensions: 330832
Number of successful extensions: 896
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)