Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30310.Seq
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3278| Best HMM Match : ORC2 (HMM E-Value=0)                         30   1.3  
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_22170| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_36880| Best HMM Match : DUF1337 (HMM E-Value=0.54)                  27   9.0  

>SB_3278| Best HMM Match : ORC2 (HMM E-Value=0)
          Length = 459

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 318 RRVCDAPRPARHTSHDSVTLI*CHNGSHLATLRF*KKKSADGNSG-GQEGGSKKKDENEN 494
           RR+   P+P +  S DS      H   H  T    +  + DGN    +EG S K DE+EN
Sbjct: 46  RRLPPRPQPIKPASKDSDDDTGSHTSGHENT----EDDTDDGNDDDNKEGSSGKDDESEN 101

Query: 495 Q 497
           +
Sbjct: 102 E 102


>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 122 FYYNHVYSMRPYGMLQI*RLRSSAPVFASVSFQAKWLTRLPVFSK 256
           FYY+H+ S      L++  +    P+FA +  + +++ +LP F K
Sbjct: 103 FYYDHLMSRDGSKPLRVRSMVGLVPLFACLVLEDEFVQKLPGFKK 147


>SB_22170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = -1

Query: 474 FWSHPPALRCFHRPTFFSKTVVLRG----GYHCDIRSKSLNRVTYVLP 343
           FW HP      + PT  ++T  L G    G   D  ++SL R + VLP
Sbjct: 336 FWDHPWGALSINTPTLVTQTGFLDGISDSGLLTDTHTRSLFRDSAVLP 383


>SB_36880| Best HMM Match : DUF1337 (HMM E-Value=0.54)
          Length = 367

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = +3

Query: 423 KKKSADGNSGGQEGGSKKKD---ENENQLKRTKAVN 521
           KKK  D    G E   KKKD   E E +L++ +  N
Sbjct: 86  KKKQGDAKESGDEEEGKKKDEPTEKEEELRKERQEN 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,701,447
Number of Sequences: 59808
Number of extensions: 367817
Number of successful extensions: 1448
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1446
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)