Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30310.Seq
         (609 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    25   1.4  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         25   2.5  
AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/T...    25   2.5  
EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger pr...    24   3.3  
DQ004399-1|AAY21238.1|  847|Anopheles gambiae lysozyme c-6 protein.    23   7.7  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 12/46 (26%), Positives = 17/46 (36%)
 Frame = -1

Query: 531 PPRNSRLLFSLTDFRFHPFFWSHPPALRCFHRPTFFSKTVVLRGGY 394
           PP   R   +     F P         +  + PTFF +T  L  G+
Sbjct: 10  PPTRKRYCINSASIEFMPAGSERKDVCKTGYEPTFFLRTFDLNNGF 55


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 165  YKYEDCGPPLQCLPRSAFKRNGLQDCQFFQKVRFATCAVPALVLNR 302
            Y++ D    LQ +  +++  N L DC  +Q++ F   A+   ++ R
Sbjct: 1991 YRFRDRSYLLQAMTHASYSPNRLTDC--YQRLEFLGDAILDYLITR 2034



 Score = 23.4 bits (48), Expect = 5.8
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -1

Query: 471  WSHPPALRCFHRPTFFSKTVVLRGGYHCD 385
            W     L C +RP F  +  + RGG   D
Sbjct: 1545 WLRLHDLYCLNRPFFPERYTIFRGGSQFD 1573


>AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/Thr
            phosphatase protein.
          Length = 1977

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +3

Query: 363  DSVTLI*CHNGSHLATLRF*KKKSADG-NSGGQEGGSKKKDEN 488
            D  T I  H+      L      S  G   GG EGGS K+D++
Sbjct: 1692 DGTTTIIIHDSEDEKDLDIILSGSGGGVGGGGDEGGSDKEDDD 1734


>EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger
           protein.
          Length = 993

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 423 KKKSADGNSGGQEGGSKKKDENENQLKRT 509
           K  +  G  GG +GGS  K    N L++T
Sbjct: 389 KLLTVGGGGGGGDGGSDGKKPPNNPLEKT 417


>DQ004399-1|AAY21238.1|  847|Anopheles gambiae lysozyme c-6 protein.
          Length = 847

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -2

Query: 230 AISLES*PRQTLERRTAIFIFVTYHRAAWSTHDCSKIQANGGG 102
           A+ L    R  +E+  A ++ + YH + ++T    ++ A+G G
Sbjct: 186 AMELRDRHRMPIEQ-IATWVCIAYHESRFNTSAEGRLNADGSG 227


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 595,834
Number of Sequences: 2352
Number of extensions: 11498
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 59291487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)