Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30310.Seq
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53180-2|AAK68284.1|  477|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z68337-9|CAA92751.2|  334|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z81497-7|CAB04083.3|  652|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z75955-17|CAB00127.3|  652|Caenorhabditis elegans Hypothetical p...    27   7.9  
U80441-3|AAB37653.2|  262|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ...    27   7.9  

>U53180-2|AAK68284.1|  477|Caenorhabditis elegans Hypothetical
           protein D1014.6 protein.
          Length = 477

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 477 FFWSHPPALRCFHRPTFFSK-TVVLRGGYHCDIRSKSLNRVTYVL 346
           F W +     C HR  FFSK T V+      ++RS+S   +  +L
Sbjct: 282 FMWHNAQINDCHHRSKFFSKWTAVIDIDERIEMRSESFKTIISLL 326


>Z68337-9|CAA92751.2|  334|Caenorhabditis elegans Hypothetical
           protein M7.13 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 513 LLFSLTDFRFHPFFWSHPPAL 451
           +L+S  DF   PFF+S+ PAL
Sbjct: 58  ILYSFVDFVVAPFFYSYGPAL 78


>Z81497-7|CAB04083.3|  652|Caenorhabditis elegans Hypothetical
           protein R07B7.2 protein.
          Length = 652

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = -2

Query: 332 IAHTADRAVDTVED*SWHGTGSESNLLKKLAVL*AISLES*PRQTLERRTAIFIFV 165
           I  TA+R   T    +  GT SES L++KLA      L++  R+ ++ RTA  I++
Sbjct: 96  ICSTANRTTQTCHATNIAGTNSESCLIEKLANSLLEHLQA--RRPIKARTAFPIYL 149


>Z75955-17|CAB00127.3|  652|Caenorhabditis elegans Hypothetical
           protein R07B7.2 protein.
          Length = 652

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = -2

Query: 332 IAHTADRAVDTVED*SWHGTGSESNLLKKLAVL*AISLES*PRQTLERRTAIFIFV 165
           I  TA+R   T    +  GT SES L++KLA      L++  R+ ++ RTA  I++
Sbjct: 96  ICSTANRTTQTCHATNIAGTNSESCLIEKLANSLLEHLQA--RRPIKARTAFPIYL 149


>U80441-3|AAB37653.2|  262|Caenorhabditis elegans Hypothetical
           protein F27C1.3 protein.
          Length = 262

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 423 KKKSAD--GNSGGQEGGSKKKDENENQLKRTKAVN 521
           KKK +D  G +GG  GG    D+ +++ +R K  N
Sbjct: 40  KKKYSDETGTTGGTTGGDDDDDDEDDEKRRKKKKN 74


>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
            protein Y32B12B.4 protein.
          Length = 1528

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 382  NVTMVATSQHYGFRKKSRPMETAEGRRVAPKKRMKTKI 495
            NV +VA S    +RK+ +   T + + VAPKKR  + +
Sbjct: 1285 NVPVVAQSARRAYRKRIKT--TTDAKTVAPKKRSSSSM 1320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,153,495
Number of Sequences: 27780
Number of extensions: 271627
Number of successful extensions: 682
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)