Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30310.Seq
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68370.1 68414.m07809 gravity-responsive protein / altered re...    32   0.34 
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains...    29   1.8  
At2g17705.1 68415.m02051 expressed protein                             29   3.2  

>At1g68370.1 68414.m07809 gravity-responsive protein / altered
           response to gravity protein (ARG1) identical to Altered
           Response to Gravity [Arabidopsis thaliana] GI:4249662;
           contains Pfam profile PF00226 DnaJ domain
          Length = 410

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
 Frame = +3

Query: 159 VCYK-YEDCGPPLQCLPRSAF-KRNGLQDCQFFQKVRFATCAVPALVLNRVHRPVRRVCD 332
           +C K YED    L+ +      KRN L+  QF  + R A       V NR +   ++  D
Sbjct: 282 LCAKTYEDTTEKLKEIEAQILRKRNELR--QFETEYRKALARFQE-VTNR-YTQEKQTVD 337

Query: 333 APRPARHTSHDSVTLI*CHNGSHLATLRF*K----KKSADGNSGGQEGGSKKKDENENQ 497
                R T H + +++   +G++L+     K    +   DG+S G+EGG++ +D+++ +
Sbjct: 338 ELLKQRDTIHSTFSVVKTPSGNNLSNGSSSKAQGDESKGDGDSAGEEGGTENRDKSKRK 396


>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
           ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
          Length = 1340

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
 Frame = -1

Query: 609 SPLQPVRRXXCCKPL--RLXQWQL*YIIPPRNSRLLFSLTDFRFHPFFWSHPPALRCFHR 436
           SP++P+RR   CK L  RL   +  Y+   +    LF  ++F      W         H 
Sbjct: 474 SPIKPIRRDYVCKVLSSRLVDMERDYVTLDKRYPRLFVPSEFSKVVVNWPKQKLTLSMHT 533

Query: 435 PTFFSKTVVLRGGYHCDIRSKS 370
              F    +  GG   D++S S
Sbjct: 534 AVSFEHDYIEDGG--ADVKSTS 553


>At2g17705.1 68415.m02051 expressed protein
          Length = 135

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 126 TTIMCTPCGPMVCYKYEDCGPPL 194
           T I CT C  ++ Y Y+D GPPL
Sbjct: 72  TKIKCTSCNHLIGYIYDD-GPPL 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,238,931
Number of Sequences: 28952
Number of extensions: 247392
Number of successful extensions: 689
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)