Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30308.Seq
         (812 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        24   1.7  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   2.9  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    22   6.7  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   6.7  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   6.7  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   8.8  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.8  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/50 (18%), Positives = 25/50 (50%)
 Frame = +1

Query: 244 RHAHQRYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANF 393
           +   Q+Y+  ++ +  +E   + R+ + + L     G+ V+P   +P+ +
Sbjct: 352 KRKRQKYHDPSQLLRHVEESDKQRTHQPFLLNIPSEGIKVEPRDKAPSPY 401


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 324  FQRPVLCQYLYFINIF 277
            FQR V+ +Y+Y+  IF
Sbjct: 1208 FQRMVVARYVYYATIF 1223


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 417 FDNAGINGKVRRRA*IWLYIDAPF 346
           FDN    G V     IWL++DA +
Sbjct: 251 FDNLEELGPVCNSNNIWLHVDAAY 274


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/31 (22%), Positives = 14/31 (45%)
 Frame = -1

Query: 536 LIWHAFKEYYVADIFLVAVKKPWVRCPPSGK 444
           L+WH F  Y++  +        ++ C   G+
Sbjct: 204 LLWHTFGYYHILAMLNCLCSLWFINCTAKGR 234


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/31 (22%), Positives = 14/31 (45%)
 Frame = -1

Query: 536 LIWHAFKEYYVADIFLVAVKKPWVRCPPSGK 444
           L+WH F  Y++  +        ++ C   G+
Sbjct: 204 LLWHTFGYYHILAMLNCLCSLWFINCTAKGR 234


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 341 RKNGASMYSHIQALRRTLPFIPALS 415
           R+N AS  +H+  +   L ++P +S
Sbjct: 313 RENHASWVNHLSNIEDCLNYVPHIS 337


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 276  IPPIVPLMGMPSEYLL 229
            +P I+ L+ +PS YLL
Sbjct: 1030 VPGIIYLLSIPSMYLL 1045


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 276  IPPIVPLMGMPSEYLL 229
            +P I+ L+ +PS YLL
Sbjct: 1030 VPGIIYLLSIPSMYLL 1045


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 276  IPPIVPLMGMPSEYLL 229
            +P I+ L+ +PS YLL
Sbjct: 1030 VPGIIYLLSIPSMYLL 1045


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 276  IPPIVPLMGMPSEYLL 229
            +P I+ L+ +PS YLL
Sbjct: 1030 VPGIIYLLSIPSMYLL 1045


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,005
Number of Sequences: 336
Number of extensions: 4256
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22206566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)