Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30308.Seq
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...   124   2e-29
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...   122   8e-29
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        27   4.2  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    26   5.5  
SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc...    26   7.3  
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    26   7.3  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   9.7  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   9.7  

>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score =  124 bits (298), Expect = 2e-29
 Identities = 53/82 (64%), Positives = 64/82 (78%)
 Frame = +1

Query: 259 RYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPHGRIMG 438
           RYYGGNE+ID+ E L Q R+LEA+ L  E+WGVNVQP+SGSPAN   Y  +++PH R+MG
Sbjct: 73  RYYGGNEFIDQAERLCQTRALEAFHLDGEKWGVNVQPHSGSPANLQAYQAVMKPHDRLMG 132

Query: 439 LDLPDGGHLTHGFFTATKKISA 504
           LDLP GGHL+HGF T  K ISA
Sbjct: 133 LDLPHGGHLSHGFSTPQKAISA 154



 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 32/66 (48%), Positives = 41/66 (62%)
 Frame = +2

Query: 77  KLLNSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPI 256
           KLL + L E DP ++ I+  EK RQ+  + +IASENFTS  V+  L S + NKYSEG P 
Sbjct: 12  KLLKAPLAECDPTVYKILESEKSRQKESIALIASENFTSRAVMDALGSIMQNKYSEGYPG 71

Query: 257 NGTMGG 274
               GG
Sbjct: 72  ARYYGG 77



 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 29/78 (37%), Positives = 45/78 (57%)
 Frame = +3

Query: 513 FFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIAGHELFTQDVSIYKXXREIRRRQXEL 692
           +F +MPY V+ ++G+IDYD L + A  F+P++I+AG   + + V  YK  R+I       
Sbjct: 158 YFSTMPYNVNKETGIIDYDSLEKAAIQFRPKVIVAGASAYARLVD-YKRMRKI-TEMCNA 215

Query: 693 NLMADXGSRYLGLVAGQV 746
            L+ D  +   GLVA  V
Sbjct: 216 YLLCDM-AHISGLVAAGV 232


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score =  122 bits (293), Expect = 8e-29
 Identities = 54/82 (65%), Positives = 64/82 (78%)
 Frame = +1

Query: 259 RYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPHGRIMG 438
           RYYGGN++ID+IE L Q R+L A+ L   +WGVNVQ  SGSPAN  VY  I+ PHGR+MG
Sbjct: 67  RYYGGNKFIDQIETLCQERALAAFNLDPAKWGVNVQCLSGSPANMQVYQAIMPPHGRLMG 126

Query: 439 LDLPDGGHLTHGFFTATKKISA 504
           LDLP GGHL+HG+ T TKKISA
Sbjct: 127 LDLPSGGHLSHGYQTDTKKISA 148



 Score = 59.3 bits (137), Expect = 6e-10
 Identities = 25/53 (47%), Positives = 38/53 (71%)
 Frame = +3

Query: 513 FFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIAGHELFTQDVSIYKXXREI 671
           +FESMPY+VDP +GLIDYD L   A+LF+P++++AG   + + +  Y   R+I
Sbjct: 152 YFESMPYRVDPNTGLIDYDMLEHDAQLFRPKILVAGTSAYCRLID-YARMRQI 203



 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 30/60 (50%), Positives = 38/60 (63%)
 Frame = +2

Query: 95  LWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPINGTMGG 274
           L E DP + +I+  E DRQR+ + +IASENFTS  V+  L S + NKYSEG P     GG
Sbjct: 12  LKEQDPTVAEIMRHEADRQRSSVVLIASENFTSRAVMDALGSVMSNKYSEGYPGARYYGG 71


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 174 AIISSPAR*RSFSLTIISKSSGSASQRLLFSNLAL 70
           +I+ S +   S  LT + KSSG AS  + FSN +L
Sbjct: 397 SILQSDSLMISTQLTSVQKSSGFASYSVQFSNCSL 431


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
 Frame = +1

Query: 247 HAHQR--YYGGNEYIDEIEILAQNRSLEAYRLK----SEEWGVNVQPYSGSPANFAVY 402
           H  QR   Y      + + + A+  +  A RL      EE+G  ++P  G  AN+ +Y
Sbjct: 19  HRSQRDPQYHDENATERVLVSAETLNKTARRLNRQTLDEEYGSTIRPNEGEAANYGIY 76


>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +1

Query: 277 EYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPH 423
           +++ E + L   R+++A    S  +   + PY  SP +      I  PH
Sbjct: 15  QHLVESKFLTNQRAIKAMNATSRSFYCPLSPYMDSPQSIGYGVTISAPH 63


>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +1

Query: 250 AHQRYYGG--NEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGI 411
           A   Y GG  N+Y D   +     + + Y + +    + V PY  +   F+ + G+
Sbjct: 108 AQSTYAGGIVNDYTDFFTVNGLTGTFDNYEIYASLMALGVYPYVPTLTGFSTFLGV 163


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +2

Query: 68  MSAKLLNSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYS 241
           ++ + LN  L E D   + +   +KD +  G  ++ +EN     +L  LS+  +N +S
Sbjct: 84  ITCQALNITLSETDSSKYYLEGFKKDLEEEGSPLLFNENNVDSALLSRLSTTGNNTFS 141


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 256  QRYYG-GNEY-IDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVE 417
            Q Y G  N++ I E+ +   N+S +A     + +G    PYS    NF+ Y   VE
Sbjct: 1780 QSYEGDSNDFGIREVPLSDANQSSQADSTSIDRYG----PYSSQKVNFSKYKDFVE 1831


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,340,910
Number of Sequences: 5004
Number of extensions: 71365
Number of successful extensions: 189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)